View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5914_low_3 (Length: 303)
Name: NF5914_low_3
Description: NF5914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5914_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 40098492 - 40098739
Alignment:
| Q |
1 |
aattccattaaagagagtaatagtaataatacttacagggcacgtgacatgttgttgagaagtttctcagaatcatcaaagaacatagtcataacctcaa |
100 |
Q |
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| T |
40098492 |
aattccattaaagagagtaatagtaataatacttacagggcacgtgacatgttgttgagaagtttctcagaatcatcaaagaacatagtcataacctcaa |
40098591 |
T |
|
| Q |
101 |
tcacgaaatcaggactagtgtcgtcttgaagtttctgaagctgactgaattgatcatccagataaccctgctccctcaataaccaataatatcaaattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40098592 |
tcacgaaatcaggactagtgtcgtcttgaagtttctgaagctgactgaattgatcatccagataaccctgctccctcaataaccaataatatcaaattta |
40098691 |
T |
|
| Q |
201 |
ttaaaaataaataaacaataatcaagcttttttgacatgatttcatct |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40098692 |
ttaaaaataaataaacaataatcaagcttttttgacatgatttcatct |
40098739 |
T |
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