View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5915-Insertion-2 (Length: 865)
Name: NF5915-Insertion-2
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 9 - 589
Target Start/End: Original strand, 38920960 - 38921557
Alignment:
| Q |
9 |
catagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtt-------- |
100 |
Q |
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| T |
38920960 |
catagaaactaagattttaatgcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtttatcgcta |
38921059 |
T |
|
| Q |
101 |
----------agtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcattgggtagcctagtttaacatgtagac |
190 |
Q |
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| T |
38921060 |
agcactggtgagtaatgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcattgggtagcctagtttaacatgtagac |
38921159 |
T |
|
| Q |
191 |
ctgtacatgaatgcgtatatgatattgttcaatctagtttgggtctaaaatgttgcagcatttcatggttaggttcttcatgtctatacgtataaattca |
290 |
Q |
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| T |
38921160 |
ctgtacatgaatgcgtatatgatattgttcaatctagtttgggtctaaaatgttgcagcatttcatggttaggttcttcatgtctatacgtataaattca |
38921259 |
T |
|
| Q |
291 |
ttcatttgtgtattgtgtggtggttttggttagatagatcattattagaacaaacatcaacaatgataatattgatatccgatttagtgtgttatgaaat |
390 |
Q |
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| T |
38921260 |
ttcatttgtgtattgtgtggtggttttggttagatagatcattattagaacaaacataaaaaatgataatattgatatccgatttagtgtgttaagaaat |
38921359 |
T |
|
| Q |
391 |
gaatttaaaccttgtttttatatgttattcttcactcgtttttggtttgtataaagaacatatgcnnnnnnnngggtttatcggatgttgtacattcatt |
490 |
Q |
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| T |
38921360 |
gaatttaaaccttgtttttatatgttattcttcactcgttgttggtttgtataaagaacatatgc-tttttttgggtttatcggatgttgtacattcatt |
38921458 |
T |
|
| Q |
491 |
atttgatgcatttcgtgtatagtttatgtgatgcattttgtttggagtgtgaatttgattgcactggttttagtttaagcgtgtcatatgatatctttc |
589 |
Q |
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| T |
38921459 |
atttgatgcatttcgtgtatagtttatgtgatgaattttgtttggagtgtgaatttgattgcactggttttagtttaagcgtgtcatatgatatctttc |
38921557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 604 - 856
Target Start/End: Original strand, 38921544 - 38921794
Alignment:
| Q |
604 |
atatgatatctttctgttgttgttttccacaagtatttgggtaggcctatcctaagttctataacaaaattaaggacgaattaaacccagaatggtatcc |
703 |
Q |
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| T |
38921544 |
atatgatatctttctgttgttgttttccacaagtatttgggtagg--tatcctaagttttataacaaaatcaaggacgaattaaacccagaatggtatct |
38921641 |
T |
|
| Q |
704 |
gggtgatgaagataaacacttcttttctaaaatccttggtgattatcgggtgggataaactacagacattttacaatttgactgaggatcacatagtcat |
803 |
Q |
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| T |
38921642 |
gggtgatgaagataaacacttcttttgtgaaacccttggtgactgtcgggtgggataaactacagacattttacaacttgactggggatcaaatagtcat |
38921741 |
T |
|
| Q |
804 |
gttcagttacaatgaccatttataaattgaagtttatcagtacttttgttctt |
856 |
Q |
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| T |
38921742 |
gttcagttacaatgaccatttataaattgaagtttatcagtacttttgttctt |
38921794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 10545135 - 10545345
Alignment:
| Q |
105 |
atgaggctttaatgaacatgtttttatatggaaactccttttgttgaagatgtcattcattgggtagcctagtttaacatgtagacctgtacatgaatgc |
204 |
Q |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtcattcattgtgtagcctagtttaacatgtagacc--tacatgaatgc |
10545232 |
T |
|
| Q |
205 |
gtatatgatattgttcaatctagtttgggtctaaaatgttgcagcatttcatggttaggttcttcatg-tctatacgtataaattcattcatttgtgtat |
303 |
Q |
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||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| |
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| T |
10545233 |
gtaaatgatattgtgcgatctagtttgggtctaaaatgttgcagcatttcatggttagcttcttcatgttctatacatacaaattcattcatttgtgtat |
10545332 |
T |
|
| Q |
304 |
tgtgtggtggttt |
316 |
Q |
| |
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| T |
10545333 |
tgtgtggtggttt |
10545345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 241 - 522
Target Start/End: Complemental strand, 5140946 - 5140664
Alignment:
| Q |
241 |
tgttgcagcatttcatggttaggttcttcatgt-ctatacgtataaattcattcatttgtgtattgtgtggtggttttggttagatagatcattattaga |
339 |
Q |
| |
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||||||| |||||| || ||||||||||||||| || ||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||| || || |
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| T |
5140946 |
tgttgcaccatttcctgattaggttcttcatgttctctacatataaattcattcatttgtggattgtatggttgttttggttagatagatcatttttgga |
5140847 |
T |
|
| Q |
340 |
acaaacatcaacaatgataatattgatatccgatttagtgtgttatgaaatgaatttaaaccttg--tttttatatgttattcttcactcgtttttggtt |
437 |
Q |
| |
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|||||| ||| |||| ||||||||||||| |||||||| || | ||||||| |||||| |||| |||||||||| |||||||||||||| ||||| |
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| T |
5140846 |
acaaacctcatcaatcataatattgatatatgatttagtatggtgagaaatgagtttaaaacttgtttttttatatgatattcttcactcgtagttggtc |
5140747 |
T |
|
| Q |
438 |
tgtataaagaacatatgcnnnnnnnngggtttatcggatgttgtacattcattatttgatgcatttcgtgtatagtttatgtgat |
522 |
Q |
| |
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| T |
5140746 |
tgtgtaaaagacaactg--atttgctaggtttaccaaatgttgtatgttcattatttgatgcattttgtgtatagtttatgtgat |
5140664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 5140578 - 5140525
Alignment:
| Q |
618 |
tgttgttgttttccacaagtatttgggtaggcctatcctaagttctataacaaa |
671 |
Q |
| |
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||||||||||||||||| ||||||||| ||| | | |||||||| ||||||||| |
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| T |
5140578 |
tgttgttgttttccacaggtatttgggaaggtcgaccctaagttttataacaaa |
5140525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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