View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5915_high_1 (Length: 439)
Name: NF5915_high_1
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 220 - 433
Target Start/End: Original strand, 8518488 - 8518700
Alignment:
| Q |
220 |
aatattctaataaccatcatttgttttctaagtcatctatattataatgacttttccaactctttcaagattaaattggctaaaaattatggttgtacat |
319 |
Q |
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| T |
8518488 |
aatattgtaataagcatcgttcattttctaaatcatctacattataatgacttttccaactctttcaagattattttggctaaaaattgtggttgtacat |
8518587 |
T |
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| Q |
320 |
tgacattgacttatgagnnnnnnnctcatagtccattgacttatgacttttctatagctcattggttggtttaattttttcttcttaactgatcggtttg |
419 |
Q |
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| T |
8518588 |
ccacattgacttatgag-ttttttctcctagcccatcgacttatgacttttctacagctcattggttcgtttaattttttcttcctaactgattggtttg |
8518686 |
T |
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| Q |
420 |
atttttcatctcac |
433 |
Q |
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|||| ||||||||| |
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| T |
8518687 |
atttatcatctcac |
8518700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 243 - 433
Target Start/End: Original strand, 8530012 - 8530204
Alignment:
| Q |
243 |
ttttctaagtcatctatattataatgac----ttttccaactctttcaagattaaattggctaaaaa-ttatggttgtacattgacattgacttatgagn |
337 |
Q |
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| T |
8530012 |
ttttctaactcatctatattgtaatgaccgacttttccaactctttcaggattacattggctaaaaaattgtggttgtgcatccacattgacttatgagt |
8530111 |
T |
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| Q |
338 |
nnnnnnctcatagtccattgacttatgacttttctatagctcattggttggtttaattttttcttcttaactgatcggtttgatttttcatctcac |
433 |
Q |
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| T |
8530112 |
tttt---tcctagcccattgacttatgactttactattgctcattggttggtttaatttatttttcctaactgattggttttatttttcatctcac |
8530204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 5088558 - 5088474
Alignment:
| Q |
116 |
ataaaaatctgtaactacgcgtgggagagggaaatagtgaagctttggcacgtgtattccactttcgtcaaaattcgcaccggaa |
200 |
Q |
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| T |
5088558 |
ataaaaatctgtaactacacgtgggagagggaaatagttaagctttgccacgtgtattccactttcgtcaaaattcgcaccggaa |
5088474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 5088653 - 5088612
Alignment:
| Q |
19 |
ttattcaccggtgaa-aaaacgaagcaaacttgagagatgac |
59 |
Q |
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| T |
5088653 |
ttattcaccggtgaataaaacgaagcaaacttgagagatgac |
5088612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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