View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5915_high_4 (Length: 230)
Name: NF5915_high_4
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 38921725 - 38921544
Alignment:
| Q |
5 |
cagtcaaattgtaaaatgtctgtagtttatcc-acccgataatcaccaaggattttagaaaagaagtgtttatcttcatcacccggataccattatgggt |
103 |
Q |
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| T |
38921725 |
cagtcaagttgtaaaatgtctgtagtttatcccacccgacagtcaccaagggtttcacaaaagaagtgtttatcttcatcacccagataccattctgggt |
38921626 |
T |
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| Q |
104 |
ttaattcgtccttaattttgttatagaacttaggataggcctacccaaatacttgtggaaaacaacaacagaaagatatcatat |
187 |
Q |
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| T |
38921625 |
ttaattcgtccttgattttgttataaaacttaggata--cctacccaaatacttgtggaaaacaacaacagaaagatatcatat |
38921544 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 5140525 - 5140578
Alignment:
| Q |
120 |
tttgttatagaacttaggataggcctacccaaatacttgtggaaaacaacaaca |
173 |
Q |
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| T |
5140525 |
tttgttataaaacttagggtcgaccttcccaaatacctgtggaaaacaacaaca |
5140578 |
T |
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