View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5915_high_5 (Length: 222)
Name: NF5915_high_5
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915_high_5 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 44568239 - 44568018
Alignment:
| Q |
1 |
cacccatcggaaacaccgaccaactctcgccggaaacccatattcactaacaatgaaaggatcttctctggcatcattaggtttggaccaaccgtatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44568239 |
cacccatcggaaacaccgaccaactctcgccggcaacccatattcactaacaatgaaaggatcttctctggcatcattaggtttggaccaaccgtatagc |
44568140 |
T |
|
| Q |
101 |
tcacgttcttgtttactgcccggtacagtattatccaagataagagcaacgagaaaagctatcaccatatgcagcgaaaatatcatgttcagtacatagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44568139 |
tcacgttcttgtttactgcccggtacagtattatccaagataagagcaacgagaaaagctatcaccatatgcagcgaaaatatcatgttcagtacatagt |
44568040 |
T |
|
| Q |
201 |
tcaactgcaaaaggaacatatt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44568039 |
tcaactgcaaaaggaacatatt |
44568018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 36027421 - 36027538
Alignment:
| Q |
104 |
cgttcttgtttactgcccggtacagtattatccaagataagagcaacgagaaaagctatcaccatatgcagcgaaaatatcatgttcagtacatagttca |
203 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||| |||| || | |||||||| |
|
|
| T |
36027421 |
cgttcttgcttactgccaggtacagtattatccaagataacggcgacaagaaaagctatcaccatgtgcagcgaaaatatcgtgtttaggaaatagttca |
36027520 |
T |
|
| Q |
204 |
actgcaaaaggaacatat |
221 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
36027521 |
actgcaaaaggaaaatat |
36027538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 20127566 - 20127463
Alignment:
| Q |
115 |
actgcccggtacagtattatccaagataagagcaacgagaaaagctatcaccatatgcagcgaaaatatcatgttcagtacatagttcaactgcaaaagg |
214 |
Q |
| |
|
|||||| |||||||||||||||| ||||| |||||| ||||| ||||||||||| || ||||| | | |||||| ||||||||||||||||||||| |
|
|
| T |
20127566 |
actgccaggtacagtattatccaggataacagcaacaagaaacgctatcaccatgtgtagcgagcaaagtgtgttcaagacatagttcaactgcaaaagg |
20127467 |
T |
|
| Q |
215 |
aaca |
218 |
Q |
| |
|
|||| |
|
|
| T |
20127466 |
aaca |
20127463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University