View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5915_low_2 (Length: 429)
Name: NF5915_low_2
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915_low_2 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 35 - 429
Target Start/End: Complemental strand, 38921491 - 38921097
Alignment:
| Q |
35 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnngcatatgttctttatacaaaccaaaaacgagtg |
134 |
Q |
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| T |
38921491 |
catcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccaaaaaaagcatatgttctttatacaaaccaacaacgagtg |
38921392 |
T |
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| Q |
135 |
aagaataacatataaaaacaaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatctatc |
234 |
Q |
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| T |
38921391 |
aagaataacatataaaaacaaggtttaaattcatttcttaacacactaaatcggatatcaatattatcattttttatgtttgttctaataatgatctatc |
38921292 |
T |
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| Q |
235 |
taaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgaagaacctaaccatgaaatgctgcaacattttagacccaaactaga |
334 |
Q |
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| T |
38921291 |
taaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatagacatgaagaacctaaccatgaaatgctgcaacattttagacccaaactaga |
38921192 |
T |
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| Q |
335 |
ttgaacaatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaatgacatcttcaacaaaaggagtttccatataa |
429 |
Q |
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| T |
38921191 |
ttgaacaatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaatgacatcttcaacaaaaggagtttccatataa |
38921097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 241 - 429
Target Start/End: Complemental strand, 10545345 - 10545158
Alignment:
| Q |
241 |
aaaccaccacacaatacacaaatgaatgaatttatacgtataga-catgaagaacctaaccatgaaatgctgcaacattttagacccaaactagattgaa |
339 |
Q |
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| T |
10545345 |
aaaccaccacacaatacacaaatgaatgaatttgtatgtatagaacatgaagaagctaaccatgaaatgctgcaacattttagacccaaactagatcgca |
10545246 |
T |
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| Q |
340 |
caatatcatatacgcattcatgtacaggtctacatgttaaactaggctacccaatgaatgacatcttcaacaaaaggagtttccatataa |
429 |
Q |
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| T |
10545245 |
caatatcatttacgcattcatgt--aggtctacatgttaaactaggctacacaatgaatgacatcttcaacaaaaggagtttccatataa |
10545158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 36 - 316
Target Start/End: Original strand, 5140664 - 5140946
Alignment:
| Q |
36 |
atcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccnnnnnnngcatatgttctttatacaaaccaaaaacgagtga |
135 |
Q |
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| T |
5140664 |
atcacataaactatacacaaaatgcatcaaataatgaacatacaacatttggtaaacctagcaaat-cagttgtcttttacacagaccaactacgagtga |
5140762 |
T |
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| Q |
136 |
agaataacatataaaaa--caaggtttaaattcatttcataacacactaaatcggatatcaatattatcattgttgatgtttgttctaataatgatctat |
233 |
Q |
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|||||| |||||||||| |||| |||||| ||||||| | || |||||||| ||||||||||||| |||| ||| |||||||| || |||||||||| |
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| T |
5140763 |
agaatatcatataaaaaaacaagttttaaactcatttctcaccatactaaatcatatatcaatattatgattgatgaggtttgttccaaaaatgatctat |
5140862 |
T |
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| Q |
234 |
ctaaccaaaaccaccacacaatacacaaatgaatgaatttatacgtatag-acatgaagaacctaaccatgaaatgctgcaaca |
316 |
Q |
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| T |
5140863 |
ctaaccaaaacaaccatacaatccacaaatgaatgaatttatatgtagagaacatgaagaacctaatcaggaaatggtgcaaca |
5140946 |
T |
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