View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5915_low_3 (Length: 397)
Name: NF5915_low_3
Description: NF5915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5915_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 22944459 - 22944822
Alignment:
| Q |
13 |
tctaattctagcagtttcgttttctatctgcattgtattcacgactcaccctgtccacgccaatctcagttttcattatatatatcttctacaaaaggag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22944459 |
tctaattctagcagtttcgttttctatctgcattgtat-----actcaccctgtccacgccaatctcagttttcattatatatatcttctacaaaaggag |
22944553 |
T |
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| Q |
113 |
tatagaaatccatggctttaatatatcacaaggttagtaaccatatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22944554 |
tatagaaatccatggctttaatatatcacaaggttagtaaccatatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaa |
22944653 |
T |
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| Q |
213 |
acgatttaaatgtgtacataaatcatgggctctttcaattgaaacccctgatttcaagagtgagttcctcaaaaatttcatatttaaatatgattcttca |
312 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22944654 |
acgatttaaatgtgtacacaaatcatgggctctttcaattgaaacccctgatttcaagagtgagttcctcaaaaatttcatatctaaatatgattcttca |
22944753 |
T |
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| Q |
313 |
tacgatgatgaatgtctcctcttaaagcagacaatcccaggtaatgatgattatcgatgcgcagtttat |
381 |
Q |
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| T |
22944754 |
tacgatgatgaatgtcttctcttaaagcagacaattccaggtaatgatgattatcgatgcgcagtttat |
22944822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 44919486 - 44919383
Alignment:
| Q |
142 |
aaggttagtaaccatatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaaacgatttaaatgtgtacataaatcatggg |
241 |
Q |
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|||||||| || || ||||| |||||||||| || |||||| |||| |||||||||||||| || | || | |||| ||||||||| ||||||||||| |
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| T |
44919486 |
aaggttaggaatcacatacccaatgatcttgcattctctattctgtcaaaacttcctttaaaatcttttaagccatttgaatgtgtacgtaaatcatggg |
44919387 |
T |
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| Q |
242 |
ctct |
245 |
Q |
| |
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|||| |
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|
| T |
44919386 |
ctct |
44919383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 241
Target Start/End: Original strand, 367909 - 367994
Alignment:
| Q |
156 |
tatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaaacgatttaaatgtgtacataaatcatggg |
241 |
Q |
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| T |
367909 |
tatacctaatgatcttgtctattccattatgtcaaaactgcctctaaaatctttgactcgatttaaatgtgtacgcaaatcatggg |
367994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 5441486 - 5441532
Alignment:
| Q |
142 |
aaggttagtaaccatatacctaatgatcttgtcttttctattttgtc |
188 |
Q |
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| T |
5441486 |
aaggttagaaatgatatacctaatgatcttgtcttctctattttgtc |
5441532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 5450496 - 5450542
Alignment:
| Q |
142 |
aaggttagtaaccatatacctaatgatcttgtcttttctattttgtc |
188 |
Q |
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|||||||| || |||||||||||||||||||||| ||||||||||| |
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| T |
5450496 |
aaggttagaaatgatatacctaatgatcttgtcttctctattttgtc |
5450542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 39725537 - 39725452
Alignment:
| Q |
143 |
aggttagtaaccatatacctaatgatcttgtcttttctattttgtcgaaacttcctttaaagtccatgaaacgatttaaatgtgta |
228 |
Q |
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||||||| || ||| ||||| ||||| ||||||| |||||| |||| ||||||||||| || || |||| |||||| |||||||| |
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| T |
39725537 |
aggttagcaatcatgtacctgatgatattgtcttctctattctgtcaaaacttcctttcaaatctttgaagcgatttgaatgtgta |
39725452 |
T |
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