View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916-Insertion-1 (Length: 965)

Name: NF5916-Insertion-1
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916-Insertion-1
NF5916-Insertion-1
[»] chr4 (1 HSPs)
chr4 (8-696)||(12620566-12621258)
[»] chr6 (4 HSPs)
chr6 (7-291)||(7092179-7092461)
chr6 (138-253)||(15925412-15925527)
chr6 (400-690)||(15949120-15949409)
chr6 (379-509)||(21697129-21697259)
[»] chr2 (2 HSPs)
chr2 (403-564)||(21086560-21086721)
chr2 (395-463)||(34073024-34073092)
[»] chr5 (2 HSPs)
chr5 (400-518)||(8723036-8723154)
chr5 (196-249)||(27953095-27953148)
[»] chr3 (2 HSPs)
chr3 (400-483)||(15788369-15788452)
chr3 (626-678)||(44493676-44493728)
[»] chr1 (4 HSPs)
chr1 (400-690)||(26420245-26420534)
chr1 (346-463)||(25596491-25596608)
chr1 (346-463)||(38534366-38534483)
chr1 (346-463)||(38556584-38556701)
[»] scaffold0007 (1 HSPs)
scaffold0007 (424-463)||(236379-236418)
[»] scaffold0114 (1 HSPs)
scaffold0114 (395-548)||(13115-13268)
[»] chr8 (1 HSPs)
chr8 (400-461)||(39530609-39530670)


Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 696
Target Start/End: Complemental strand, 12621258 - 12620566
Alignment:
8 aagtagatcctctgtcaccttacatatatcattctatgtgatgaaggtttatcagcattgatcataattgctgaaaaccaaggggaactacatggtgtgc 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
12621258 aagtagatcctccgtcaccttacatatatcattctatgtgatgaaggcttatcagcattgatcataattgctaaaaaccaaggggaactacatggtgtgc 12621159  T
108 gtatttatcgtaatgtcccggtggtgtctgacttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcatgtgatgaagaa 207  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
12621158 gtatttatcgtaatgccccggtggtgtctgacttattgtttgctgatgaatgtttcctattgtttcaagtagaagaaagttaagctcatgtgatgaagaa 12621059  T
208 aattttaacaaggtatgaggaagcatcaggtcaagccatcagcctttactaagtccgaaatattctatagtaggaatgtccaag-----ttgcatcaatc 302  Q
    |||||||||||  |||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||     |||||||||||    
12621058 aattttaacaatttatgaggaagcatcggatcaagccatcaacctt-actaagtccgaaatattctatagtaggaatatccaagattcgttgcatcaatc 12620960  T
303 aattaccaatatcttaggagcgtgtgatctacttggaaccggaaaataccttggtttaccaccgatgatagggagtagtaagaaggcaatactcagcttt 402  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
12620959 aattaccaacatcttaggagcatgtgatctacttggaaccggaaaataccttggtttaccaccgatgatagggagaagtaagaaggcaatattcagcttt 12620860  T
403 atcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaatcc 502  Q
    |||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
12620859 atcaaagacaagctgtggtagaaaataaacagctggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcagtcaatcc 12620760  T
503 cttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatggatgaatgcgttctagtgaggaaatgggggaacaagaa 602  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
12620759 cttcgtatgtgatgaccatcttaagattacctaacactctcttagattagattgagaagatggatgaatgtgttctagtgaggaaatgggggaacaagaa 12620660  T
603 aaagagacttgcattgcttgtcatgggaaaaattatcgatgcataagaacaatggaggtatgggttttaaagatctagcagcatttaacattgc 696  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
12620659 aaagaggcttgcattgcttgtcatgggaaaaattatcgatgcataagaacaatagaggtatgggttttaaagatctagcagcatttaacgttgc 12620566  T

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Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 7092461 - 7092179
Alignment:
7 caagtagatcctctgtcaccttacatatatcattctatgtgatgaaggtttatcagcattgatcataattgctgaaaaccaaggggaactacatggtgtg 106  Q
    |||| ||| ||||| ||||||||| ||| ||||| | |||| |||||| |||||| ||||||| | |  || ||||||   ||||||||| || |||||     
7092461 caaggagaccctctatcaccttacttat-tcattttgtgtgttgaaggcttatcaacattgattaaatatgttgaaaatataggggaacttcaaggtgta 7092363  T
107 cgtatttatcgtaatgtcccggtggtgtctgacttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcatgtgatgaaga 206  Q
    ||||||| ||||| |||||||||||||||| | |||||||||| |||||   ||||| | || ||| ||| ||| |||||  ||||||||||||||||      
7092362 cgtatttgtcgtagtgtcccggtggtgtctcatttattgtttgttgatggtcgtttcatgttcttctaagcagaggaaagccaagctcatgtgatgaatc 7092263  T
207 aaattttaacaaggtatgaggaagcatcaggtcaagccatcagcctttactaagtccgaaatattctatagtaggaatgtccaag 291  Q
      ||||||| ||||||||||||| |||  |||||||| ||||||| || ||| ||||||||||||||||||||||||||||||||    
7092262 ggattttaaaaaggtatgaggaaccattgggtcaagctatcagcc-ttcctatgtccgaaatattctatagtaggaatgtccaag 7092179  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 15925527 - 15925412
Alignment:
138 acttattgtttgctgatgaatgtttcctattgttccaagtagaagaaagttaagctcatgtgatgaagaaaattttaacaaggtatgaggaagcatcagg 237  Q
    |||||||||||||||| || |||||  | || ||||||| ||| || ||| ||||| |||| |||||| | ||||| ||||||||||| |||||||| ||    
15925527 acttattgtttgctgacgactgttttttgttcttccaagcagaggatagtcaagcttatgttatgaagcagattttgacaaggtatgaagaagcatcggg 15925428  T
238 tcaagccatcagcctt 253  Q
    ||||||||||| ||||    
15925427 tcaagccatcaacctt 15925412  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 400 - 690
Target Start/End: Original strand, 15949120 - 15949409
Alignment:
400 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaa 499  Q
    |||||||| || || |||||| ||| ||||||||||||||| || || ||| | || |||||||  | |||||| ||| | ||   ||| || |||||||    
15949120 tttatcaaggatagagtgtggcagagaataagcagttggagcagcaagtgtttatctaaagcagggaaggaagtcatggtcaagtctgtccttcaatcaa 15949219  T
500 tcccttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatggatgaatgcgttctagtgaggaaatgggggaacaa 599  Q
    ||||||| ||||| ||||| ||||| |||||||| || ||| | || ||| || |||| || || ||||||||| |||| ||| ||| |||| || ||||    
15949220 tcccttcatatgttatgagtatcttcagattaccaaatactttgttggatgagattgaaaaaat-gatgaatgcattctggtggggacatggaggtacaa 15949318  T
600 gaaaaagagacttgcattgcttgtcatgggaaaaattatcgatgcataagaacaatggaggtatgggttttaaagatctagcagcatttaa 690  Q
    | || | || ||||| ||| || || |||||||| |||||  | || || ||  |||||||||||||||| |||||||| ||||| |||||    
15949319 gcaacaaaggcttgcgttggttatcctgggaaaagttatcagtacacaaaaatcatggaggtatgggtttcaaagatctggcagcctttaa 15949409  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 379 - 509
Target Start/End: Original strand, 21697129 - 21697259
Alignment:
379 agtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatga 478  Q
    |||||||||||||   ||||||| ||||| || || || ||| |||| || || || ||||||||||||||  |||| ||||||| ||||||||| ||||    
21697129 agtaagaaggcaaccttcagcttcatcaaggatagagtttggcagaagattagtagctggagtagtaaatgcttgtccaaagcaggaagggaagtcatga 21697228  T
479 ttaaagttgttctgcaatcaatcccttcgta 509  Q
    | |||   ||||| ||||| || ||||||||    
21697229 tcaaatcagttcttcaatctattccttcgta 21697259  T

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Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 403 - 564
Target Start/End: Complemental strand, 21086721 - 21086560
Alignment:
403 atcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaatcc 502  Q
    |||||||| || ||||||||||| || || |||||||| ||||||||| |||| ||||||| ||||||||| ||||| |||   ||||| ||||| || |    
21086721 atcaaagatagagtgtggtagaagattagtagttggagcagtaaatgtttgtctaaagcaggaagggaagtcatgataaaatcggttcttcaatctattc 21086622  T
503 cttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatg 564  Q
    | || ||||| ||||| ||||| |||||||| |||||| | |||||| |  |||||||||||    
21086621 catcctatgttatgagtatcttcagattaccaaacactttgttagatgaaattgagaagatg 21086560  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 395 - 463
Target Start/End: Complemental strand, 34073092 - 34073024
Alignment:
395 tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcag 463  Q
    |||| |||||||| ||||| |||||| | ||||| ||||||||||||||||||||| |||| |||||||    
34073092 tcagttttatcaaggacagagtgtggcaaaaaattagcagttggagtagtaaatgtttgtccaaagcag 34073024  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 400 - 518
Target Start/End: Original strand, 8723036 - 8723154
Alignment:
400 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaa 499  Q
    |||||||||||  | |||||| ||||||||||||| ||||||||||||||  | || ||||||| |||| |||| |||||||||  ||| || ||| | |    
8723036 tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaaggaaagttatgattaaatctgtcctccaagcta 8723135  T
500 tcccttcgtatgtgatgag 518  Q
    ||||||||||||| |||||    
8723136 tcccttcgtatgttatgag 8723154  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 27953148 - 27953095
Alignment:
196 tgtgatgaagaaaattttaacaaggtatgaggaagcatcaggtcaagccatcag 249  Q
    |||||||||| | |||||||||  ||||||||||||||||||||||||||||||    
27953148 tgtgatgaagcagattttaacacagtatgaggaagcatcaggtcaagccatcag 27953095  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 15788369 - 15788452
Alignment:
400 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaa 483  Q
    |||||||||||  | |||||| ||||||||||||| ||||||||||||||  | || ||||||| ||||||||| |||||||||    
15788369 tttatcaaagatcgagtgtggcagaaaataagcagctggagtagtaaatgcttatccaaagcaggaagggaagttatgattaaa 15788452  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 678
Target Start/End: Original strand, 44493676 - 44493728
Alignment:
626 tgggaaaaattatcgatgcataagaaca-atggaggtatgggttttaaagatct 678  Q
    ||||||||||||||||||||||| |||| |||| || |||||||||||||||||    
44493676 tgggaaaaattatcgatgcataa-aacacatggtggcatgggttttaaagatct 44493728  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 690
Target Start/End: Complemental strand, 26420534 - 26420245
Alignment:
400 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgcaatcaa 499  Q
    |||||||| || || |||||| | | ||||||||||||||| || || ||| | || |||||||  | |||||| ||| | ||   ||| || |||||||    
26420534 tttatcaaggatagagtgtggcaaagaataagcagttggagcagcaagtgtttatctaaagcagggaaggaagtcatggtcaagtctgtccttcaatcaa 26420435  T
500 tcccttcgtatgtgatgagcatcttaagattacctaacactctcttagattagcttgagaagatggatgaatgcgttctagtgaggaaatgggggaacaa 599  Q
    ||||||| ||||| ||||| ||||| |||||||| || ||| | || ||| || |||| || ||| |||||||| |||| ||| ||| |||| || ||||    
26420434 tcccttcatatgttatgagtatcttcagattaccaaatactttgttggatgagattgaaaaaatg-atgaatgcattctggtggggacatggaggtacaa 26420336  T
600 gaaaaagagacttgcattgcttgtcatgggaaaaattatcgatgcataagaacaatggaggtatgggttttaaagatctagcagcatttaa 690  Q
    | || | || ||||| ||| || || |||||||| |||||  | || || ||  |||||||||||||||| |||||||| ||||| |||||    
26420335 gcaacaaaggcttgcgttggttatcctgggaaaagttatcagtacacaaaaatcatggaggtatgggtttcaaagatctggcagcctttaa 26420245  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 346 - 463
Target Start/End: Complemental strand, 25596608 - 25596491
Alignment:
346 aaataccttggtttaccaccgatgatagggagtagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagta 445  Q
    |||||||||||||||||  | ||||| ||  ||||||| || ||||   |||| || ||||| || || || ||| ||||||| || ||||||||||| |    
25596608 aaataccttggtttaccttccatgatcggccgtagtaaaaaagcaaccttcagtttcatcaaggatagagtttgggagaaaattagtagttggagtagca 25596509  T
446 aatgtctgtcaaaagcag 463  Q
    ||||||||||||||||||    
25596508 aatgtctgtcaaaagcag 25596491  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 463
Target Start/End: Complemental strand, 38534483 - 38534366
Alignment:
346 aaataccttggtttaccaccgatgatagggagtagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagta 445  Q
    ||||| |||||||||||  | ||| ||||| |||| || |||||||   | || |||||||| || || || ||| | ||||| ||||||||||||||||    
38534483 aaatatcttggtttaccttccatggtagggcgtagcaaaaaggcaacttttagttttatcaaggatagagtatggcaaaaaattagcagttggagtagta 38534384  T
446 aatgtctgtcaaaagcag 463  Q
    ||||| |||| |||||||    
38534383 aatgtttgtccaaagcag 38534366  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 463
Target Start/End: Complemental strand, 38556701 - 38556584
Alignment:
346 aaataccttggtttaccaccgatgatagggagtagtaagaaggcaatactcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagta 445  Q
    ||||| |||||||||||  | ||| ||||| |||| || |||||||   | || |||||||| || || || ||| | ||||| ||||||||||||||||    
38556701 aaatatcttggtttaccttccatggtagggcgtagcaaaaaggcaacttttagttttatcaaggatagagtatggcaaaaaattagcagttggagtagta 38556602  T
446 aatgtctgtcaaaagcag 463  Q
    ||||| |||| |||||||    
38556601 aatgtttgtccaaagcag 38556584  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 463
Target Start/End: Complemental strand, 236418 - 236379
Alignment:
424 aaaataagcagttggagtagtaaatgtctgtcaaaagcag 463  Q
    ||||| |||||||||||||||||||||||||| |||||||    
236418 aaaattagcagttggagtagtaaatgtctgtccaaagcag 236379  T

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Target: scaffold0114 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 395 - 548
Target Start/End: Complemental strand, 13268 - 13115
Alignment:
395 tcagctttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagcagaaagggaagtaatgattaaagttgttctgca 494  Q
    ||||||||||||| || || |||||| | | ||| || |||||||| || |||||| |||| ||||| |  ||||| || ||||| |||  |||||| ||    
13268 tcagctttatcaaggatagagtgtggcaaagaattagtagttggagcagcaaatgtttgtctaaagctgggagggaggttatgatcaaatctgttcttca 13169  T
495 atcaatcccttcgtatgtgatgagcatcttaagattacctaacactctcttaga 548  Q
    | | || || || ||||| ||||||||||| |||||||| |||| ||| |||||    
13168 agctattccatcttatgtcatgagcatctttagattaccaaacattctattaga 13115  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 461
Target Start/End: Original strand, 39530609 - 39530670
Alignment:
400 tttatcaaagacagggtgtggtagaaaataagcagttggagtagtaaatgtctgtcaaaagc 461  Q
    ||||| ||||| || |||||| |||||||||  |||||||||||||| |||||||| |||||    
39530609 tttattaaagatagagtgtggcagaaaataaatagttggagtagtaagtgtctgtctaaagc 39530670  T

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