View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916-Insertion-10 (Length: 450)

Name: NF5916-Insertion-10
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916-Insertion-10
NF5916-Insertion-10
[»] chr5 (19 HSPs)
chr5 (107-412)||(10212170-10212475)
chr5 (9-210)||(10215704-10215905)
chr5 (174-416)||(13855925-13856167)
chr5 (117-412)||(10105801-10106097)
chr5 (181-412)||(10109214-10109445)
chr5 (140-413)||(10102715-10102991)
chr5 (173-412)||(10209685-10209924)
chr5 (273-416)||(12104608-12104751)
chr5 (225-403)||(12109354-12109533)
chr5 (262-413)||(9674763-9674918)
chr5 (181-322)||(9660199-9660340)
chr5 (244-322)||(10215906-10215984)
chr5 (362-423)||(10215979-10216040)
chr5 (270-324)||(37278735-37278789)
chr5 (266-325)||(3467667-3467726)
chr5 (36-87)||(10104247-10104298)
chr5 (36-87)||(10107727-10107778)
chr5 (352-402)||(10219135-10219185)
chr5 (174-254)||(9674059-9674140)
[»] chr8 (5 HSPs)
chr8 (181-325)||(31555089-31555233)
chr8 (181-325)||(31878236-31878380)
chr8 (198-403)||(31558191-31558396)
chr8 (271-318)||(13568429-13568476)
chr8 (216-325)||(4042194-4042303)
[»] chr1 (11 HSPs)
chr1 (221-395)||(10542321-10542496)
chr1 (197-328)||(42202365-42202496)
chr1 (197-328)||(42211233-42211364)
chr1 (190-324)||(45151994-45152128)
chr1 (197-329)||(2176292-2176424)
chr1 (220-328)||(42409594-42409702)
chr1 (190-325)||(45316380-45316515)
chr1 (261-325)||(43014366-43014430)
chr1 (214-324)||(51795018-51795128)
chr1 (262-328)||(42217273-42217339)
chr1 (266-326)||(42417640-42417700)
[»] chr7 (6 HSPs)
chr7 (181-325)||(3649475-3649619)
chr7 (181-325)||(3647026-3647170)
chr7 (181-316)||(3657601-3657736)
chr7 (267-320)||(3641211-3641264)
chr7 (214-253)||(3656176-3656215)
chr7 (261-308)||(19523283-19523330)
[»] chr4 (6 HSPs)
chr4 (223-329)||(25698804-25698910)
chr4 (181-325)||(17889422-17889566)
chr4 (229-310)||(46362507-46362588)
chr4 (258-306)||(36790854-36790902)
chr4 (261-325)||(49588194-49588258)
chr4 (271-311)||(20918685-20918725)
[»] chr3 (2 HSPs)
chr3 (215-328)||(46446211-46446324)
chr3 (186-325)||(21884021-21884160)
[»] chr6 (2 HSPs)
chr6 (261-325)||(33891592-33891656)
chr6 (270-324)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (222-316)||(26568347-26568441)
chr2 (261-330)||(5900520-5900589)
chr2 (261-298)||(43633443-43633480)
chr2 (270-323)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 107 - 412
Target Start/End: Original strand, 10212170 - 10212475
Alignment:
Q  107 atacaattggtaaagaactcccttaaacaagtagcataccaaaaacatagtaaccacataaaaataggaataggaaaatattgaactaaaattgcagagc 206  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||| |||||||||| ||||||||||||||||    
T  10212170 atacaagtggtaaagaactcccttaaacaagtagcataccaataacatagtaaccacaaaaaaacaagaataagaaaatattgtactaaaattgcagagc 10212269  T
Q  207 cctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 306  Q
    | |  || | || ||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10212270 cttcggtgaggaggactcttccaaaaactagcgtatgccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtg 10212369  T
Q  307 atcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatc 406  Q
    |||| ||||||||||||| | |   ||||||||||||  | ||| ||||||||||| | ||||||||||||||||| |||||| ||||| |||| |||||    
T  10212370 atcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgtgatcagcatagtttagtttatgcattggtagatgtgggacattatc 10212469  T
Q  407 agacac 412  Q
    ||||||    
T  10212470 agacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 10215704 - 10215905
Alignment:
Q  9 tatcatataactaatcattattatcagtaaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaattaatcggcttaaacatattat 108  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10215704 tatcatataactaatcattattatcaataaatcaagtcaacataggtctatgaagttatgcaatcatctcaagactaattaatcagcttaaacatattat 10215803  T
Q  109 acaattggtaaagaactcccttaaacaagtagcataccaaaaacatagtaaccacataaaaataggaataggaaaatattgaactaaaattgcagagccc 208  Q
    |||| |||||||||||||||||  |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215804 acaagtggtaaagaactcccttgcacaagtagcatatcagaaacatagttaccacataaaaataggaataggaaaatattgaactaaaattgcagagccc 10215903  T
Q  209 ta 210  Q
    ||    
T  10215904 ta 10215905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 174 - 416
Target Start/End: Complemental strand, 13856167 - 13855925
Alignment:
Q  174 gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattct 273  Q
    ||||||||||||||||||||||||||||| |||||| ||| |||| |||||| ||||||||||| ||||||||||||| | || ||||||||||||||||    
T  13856167 gaataggaaaatattgaactaaaattgcaaagccctctgtgaagaggactctcccaaaaactagtgtatgccgctaatagcaacgctcacacggtattct 13856068  T
Q  274 ttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtt 373  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  | ||||||||||| || ||  ||||||||||| ||||||||||    
T  13856067 ttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttctttttatatgtgaactgcatagtt 13855968  T
Q  374 tagtttatgaattggtcgatgttggactttatcagacacccac 416  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  13855967 tagtttatgaattggttgatgtgggactctatcagacacccac 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 117 - 412
Target Start/End: Complemental strand, 10106097 - 10105801
Alignment:
Q  117 taaagaactcccttaaacaagtagcataccaaaa-acatagtaaccacataaaaataggaataggaaaatattgaactaaaattgcagagccctatgtaa 215  Q
    |||| |||| |||||||||| |||||||||| |  |||||| ||| |||| |||| | |||||  |||| ||||||||||| ||||||||||||   |||    
T  10106097 taaataactaccttaaacaaatagcataccatattacatagcaactacattaaaaaaagaatacaaaaaaattgaactaaatttgcagagccctcaataa 10105998  T
Q  216 agaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca 315  Q
    ||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10105997 agaggactcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca 10105898  T
Q  316 cggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 412  Q
    ||||||||||||| ||  | |||||| | || ||| ||||||||  ||||||||||||||||||||||| ||| |||||| ||||||| ||||||||    
T  10105897 cggctccgtgcttaaaaaaagtagagatcctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 181 - 412
Target Start/End: Complemental strand, 10109445 - 10109214
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| ||| ||||||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  10109445 aaaaaatttaactaaaattgcagagccctccataaagaggactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 10109346  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgct-ttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagttt 379  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | || |  ||| |||||| || ||  ||||||||  ||||||||||||||||||    
T  10109345 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaagg-agaggttctatctttttatatgcaagctgcatagtttagttt 10109247  T
Q  380 atgaattggtcgatgttggactttatcagacac 412  Q
    ||||||||| |||||| ||||||||||||||||    
T  10109246 atgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 140 - 413
Target Start/End: Complemental strand, 10102991 - 10102715
Alignment:
Q  140 gcataccaaaaacatagtaaccacataaaaatag--gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactag 237  Q
    ||||||||| ||||||| |||||||||||||||   |||||  |||||||||||||||| ||||||||||||   | |||| ||||||||||||||||||    
T  10102991 gcataccaataacatagcaaccacataaaaataaaagaatacaaaaatattgaactaaatttgcagagccctcaatgaagaggactcttccaaaaactag 10102892  T
Q  238 cgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt--gctttaaggag 335  Q
     |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    |||||  ||    
T  10102891 tgtatgccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaag 10102792  T
Q  336 gtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacacc 413  Q
     | |||||  | ||  |||||| || ||| |||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  10102791 ct-gaggtcttttcgttttataagtaagcagcatagtttagtttatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 173 - 412
Target Start/End: Original strand, 10209685 - 10209924
Alignment:
Q  173 ggaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattc 272  Q
    ||||||| |||  ||||||||||||||||||||||||   ||||||  |||||||||||||||| |||||||| || ||||| | |||||||||||||||    
T  10209685 ggaatagaaaatcattgaactaaaattgcagagccctccataaagagaactcttccaaaaactaacgtatgccactcattgtgacgctcacacggtattc 10209784  T
Q  273 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 372  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |  | | | |||| || ||  ||||||||  |||||||||||    
T  10209785 tttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatgcaagctgcatagt 10209884  T
Q  373 ttagtttatgaattggtcgatgttggactttatcagacac 412  Q
    |||||||||||||||| |||||| ||||||||| ||||||    
T  10209885 ttagtttatgaattgggcgatgtgggactttattagacac 10209924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 273 - 416
Target Start/End: Original strand, 12104608 - 12104751
Alignment:
Q  273 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 372  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  | || |||||||| || ||  ||||||||||||||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  373 ttagtttatgaattggtcgatgttggactttatcagacacccac 416  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  12104708 ttagtttatgaattggtcgatgtgggactttattagacacccac 12104751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 225 - 403
Target Start/End: Original strand, 12109354 - 12109533
Alignment:
Q  225 ttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 324  Q
    ||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||    
T  12109354 ttccaaaaactagcgtatgccacaaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgt 12109453  T
Q  325 gctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagttt-agtttatgaattggtcgatgttggacttt 403  Q
    ||||   ||||||||||||  | ||| ||||||| ||||  || |||||| |||||||| |||||||||||| |||||||    
T  12109454 gcttattggaggtagaggtcatttcattttatatatgagaagcttagtttcagtttatgcattggtcgatgtgggacttt 12109533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 262 - 413
Target Start/End: Original strand, 9674763 - 9674918
Alignment:
Q  262 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca---cggctccgtgctttaaggaggtagaggtgctgtcaatttatat 358  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||||   ||||||||||||||||  |||||||||| || | | |||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  359 gtgagctgcatagtttagtttatgaattggtcgatgttggacttta-tcagacacc 413  Q
    |||||| ||||||||||| ||||| |||||  ||||| |||||||| |||||||||    
T  9674863 gtgagcagcatagtttagcttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 322
Target Start/End: Original strand, 9660199 - 9660340
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||||||||||||||||||||||||| ||   | || | |||||||||||||||| || ||||| ||||||||| | | |||||| ||||||||||||||    
T  9660199 aaaatattgaactaaaattgcagagcactccatgaataggactcttccaaaaactggcatatgctgctaattgtgacgttcacacagtattctttagtaa 9660298  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctcc 322  Q
    ||||| ||| |||||||||||||||||||| |||| ||||||    
T  9660299 aaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 10215906 - 10215984
Alignment:
Q  244 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 322  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  10215906 ccgctaattgtaacactcacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 423
Target Start/End: Original strand, 10215979 - 10216040
Alignment:
Q  362 agctgcatagtttagtttatgaattggtcgatgttggactttatcagacacccacaggttct 423  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  10215979 agctccatagtttagtttctgaattggtcgatgtgggactttatcagacacccacatgttct 10216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  270 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 324  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Original strand, 3467667 - 3467726
Alignment:
Q  266 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 3467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 10104298 - 10104247
Alignment:
Q  36 taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat 87  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  10104298 taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat 10104247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 10107778 - 10107727
Alignment:
Q  36 taaatcaagtcaacatatgtctatgaagttatgcaatcatctcaagactaat 87  Q
    |||||||||||||||   ||||||||| ||||||||||||||||||||||||    
T  10107778 taaatcaagtcaacaatggtctatgaaattatgcaatcatctcaagactaat 10107727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 402
Target Start/End: Original strand, 10219135 - 10219185
Alignment:
Q  352 tttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactt 402  Q
    |||||| || ||| |||||||||||||||||||||||| ||||| ||||||    
T  10219135 tttataagtaagcagcatagtttagtttatgaattggttgatgtgggactt 10219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 9674059 - 9674140
Alignment:
Q  174 gaataggaaaatattgaactaaaattgcagagccctatgtaaagaagactctt-ccaaaaactagcgtatgccgctaattgt 254  Q
    |||| |||||| |||| ||||| |||||||||||||   | |||| ||||||| |||||||||||| |||||||| ||||||    
T  9674059 gaatgggaaaacattgtactaatattgcagagccctcaatgaagatgactctttccaaaaactagcatatgccgcaaattgt 9674140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 325
Target Start/End: Original strand, 31555089 - 31555233
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| ||| |||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31555089 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31555188  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  31555189 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 31878380 - 31878236
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| ||| |||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  31878380 aaaaaattaaactaatattgcagagccctcaataaagaagactcttccaaaaactagcgtatgccgctaattgtgacgctcacacggtattctttagtaa 31878281  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  31878280 aaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 31558191 - 31558396
Alignment:
Q  198 ttgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagtt 297  Q
    ||||||||||||   || ||| |||||||| |||||||| ||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  31558191 ttgcagagccctcaatatagaggactcttctaaaaactaacgtatgccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagtt 31558290  T
Q  298 cgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttg 397  Q
    ||||||||||||| ||||||||||| |||||  |  ||||||| ||||| ||| ||||||||  ||| || | |||  ||||||| ||||| |||||| |    
T  31558291 cgctatgtgatcatcacacggctccatgcttataaaaggtagaagtgctttcagtttatatgcaagcagcttggttgggtttatgcattggccgatgtgg 31558390  T
Q  398 gacttt 403  Q
    ||||||    
T  31558391 gacttt 31558396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  271 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacgg 318  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 325
Target Start/End: Original strand, 4042194 - 4042303
Alignment:
Q  216 agaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca 315  Q
    |||||||||||||||||| | || ||||||| |||| || | |  | ||| |||||||||||| |||||||||||||||||| ||| || | ||| ||||    
T  4042194 agaagactcttccaaaaattggcatatgccgttaatagtgacgagcccacagtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcaca 4042293  T
Q  316 cggctccgtg 325  Q
    ||||| ||||    
T  4042294 cggctgcgtg 4042303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 221 - 395
Target Start/End: Complemental strand, 10542496 - 10542321
Alignment:
Q  221 actcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 320  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10542496 actcttccaaaaactagcgtatgccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 10542397  T
Q  321 ccgtgcttta-aggaggtagaggtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgt 395  Q
    |||||||||| |   | |||| || || ||| ||||||||||||| || ||||| |||| ||| ||| ||||||||    
T  10542396 ccgtgctttataactgttagatgtcctttcattttatatgtgagcagcttagttaagttgatgtattagtcgatgt 10542321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 42202365 - 42202496
Alignment:
Q  197 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 296  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  42202365 attgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagt 42202464  T
Q  297 tcgctatgtgatcaacacacggctccgtgctt 328  Q
    ||||||||| ||||||||||||||||||||||    
T  42202465 tcgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 42211233 - 42211364
Alignment:
Q  197 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 296  Q
    |||||||||||||    ||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||    
T  42211233 attgcagagccctccaaaaagaagactcttccaaaaactagcgtatgccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagt 42211332  T
Q  297 tcgctatgtgatcaacacacggctccgtgctt 328  Q
    ||||||||| ||||||||||||||||||||||    
T  42211333 tcgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 190 - 324
Target Start/End: Complemental strand, 45152128 - 45151994
Alignment:
Q  190 aactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaa 289  Q
    |||||| |||||||||||||  ||||||| ||||||||||||||||||||||||||||||| ||| |  || ||||||||||||||||||||||||||||    
T  45152128 aactaatattgcagagccctccgtaaagaggactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaa 45152029  T
Q  290 gaatagttcgctatgtgatcaacacacggctccgt 324  Q
    |||||||||||||||| || | |||||||||||||    
T  45152028 gaatagttcgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 197 - 329
Target Start/End: Original strand, 2176292 - 2176424
Alignment:
Q  197 attgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagt 296  Q
    ||||||||| |||  || || ||||||||||||||||||||||||||||||||| ||| |  || |||||||||||||||||||||||||||||||||||    
T  2176292 attgcagagtcctccgttaaaaagactcttccaaaaactagcgtatgccgctaaatgtgacactgacacggtattctttagtaaaaggcgaaagaatagt 2176391  T
Q  297 tcgctatgtgatcaacacacggctccgtgcttt 329  Q
    ||||||||| || | |||||| |||||||||||    
T  2176392 tcgctatgtcattatcacacgtctccgtgcttt 2176424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 42409702 - 42409594
Alignment:
Q  220 gactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggc 319  Q
    ||||||||||||||||| |||||| || ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||    
T  42409702 gactcttccaaaaactaacgtatgtcgttaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagc 42409603  T
Q  320 tccgtgctt 328  Q
    |||||||||    
T  42409602 tccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 190 - 325
Target Start/End: Original strand, 45316380 - 45316515
Alignment:
Q  190 aactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaa 289  Q
    |||||| |||||||||||||   | |||| | ||||||||||||||| ||||||||| |||  || | | | ||||||||||||||||||||||||||||    
T  45316380 aactaatattgcagagccctcaattaagagggctcttccaaaaactaacgtatgccgttaaaagtgacgttgacacggtattctttagtaaaaggcgaaa 45316479  T
Q  290 gaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||| |||| ||||||||||||||    
T  45316480 gaatagttcgctatgtcatcatcacacggctccgtg 45316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 43014366 - 43014430
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43014366 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 51795128 - 51795018
Alignment:
Q  214 aaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaaca 313  Q
    ||||| ||||||||||||||||||| |||||||| || ||| | | | | ||| |||||||||||||||||||||| ||||||| ||||||| |||| ||    
T  51795128 aaagatgactcttccaaaaactagcatatgccgcaaaatgtgacgttgatacgctattctttagtaaaaggcgaaacaatagtttgctatgtcatcatca 51795029  T
Q  314 cacggctccgt 324  Q
    ||||| |||||    
T  51795028 cacggttccgt 51795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 42217273 - 42217339
Alignment:
Q  262 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 328  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 42417700 - 42417640
Alignment:
Q  266 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgc 326  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgc 42417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 3649619 - 3649475
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| |||||||||| |||||||||||||   | |||| ||| ||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||||||    
T  3649619 aaaaaattgaactaatattgcagagccctcaattaagaggacccttccaaaaactagcatatgccgataattgtgatgctaacacggtattctttagtaa 3649520  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    ||||||||||||||||||||||||| |||| |||||  |||||||    
T  3649519 aaggcgaaagaatagttcgctatgtcatcatcacacaactccgtg 3649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 3647170 - 3647026
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| |||| ||||| |||||||||||||   |||||| ||| ||| |||||||||| ||||||||||||| || | ||| |||||||||||||||||||    
T  3647170 aaaacattgcactaacattgcagagccctcaataaagaggaccctttcaaaaactagtgtatgccgctaatagtgacgctgacacggtattctttagtaa 3647071  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||||    
T  3647070 aaggcgaaagaatagtttgctatgtcatcatcacacggctccgtg 3647026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 316
Target Start/End: Complemental strand, 3657736 - 3657601
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||| |||||||||| ||||||||| |||   |||||| ||  |||||||||||||| ||||||||||| |||| | ||| |||||||||||||||||||    
T  3657736 aaaaaattgaactaatattgcagagtcctcgataaagatgatccttccaaaaactagtgtatgccgctatttgtgacgctgacacggtattctttagtaa 3657637  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacac 316  Q
    ||||||||||||||||||||||||| |||| |||||    
T  3657636 aaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  267 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 320  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 3656215 - 3656176
Alignment:
Q  214 aaagaagactcttccaaaaactagcgtatgccgctaattg 253  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  3656215 aaagaggactcttccaaaaactagcgtatgcccctaattg 3656176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 308  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 25698910 - 25698804
Alignment:
Q  223 tcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 322  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||| |||||    
T  25698910 tcttccaaaaactagcgtatgccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctcc 25698811  T
Q  323 gtgcttt 329  Q
    |||||||    
T  25698810 gtgcttt 25698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 17889566 - 17889422
Alignment:
Q  181 aaaatattgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaa 280  Q
    |||||||| |||||| |||||||| ||||   ||| || ||||||| |||||| ||||||||||||||  | || | |  ||||||||||||||||||||    
T  17889566 aaaatattaaactaatattgcagaaccctcattaaggaggactctttcaaaaattagcgtatgccgcttttagtgacgtgcacacggtattctttagtaa 17889467  T
Q  281 aaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  17889466 aaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 229 - 310
Target Start/End: Original strand, 46362507 - 46362588
Alignment:
Q  229 aaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatca 310  Q
    |||||||| ||||| ||||||| ||| ||||| ||| ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  46362507 aaaaactaacgtataccgctaaatgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatca 46362588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 36790902 - 36790854
Alignment:
Q  258 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36790902 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtg 36790854  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 49588194 - 49588258
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| ||||||    
T  49588194 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtg 49588258  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 20918725 - 20918685
Alignment:
Q  271 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaa 311  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatcaa 20918685  T

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Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 46446324 - 46446211
Alignment:
Q  215 aagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacac 314  Q
    |||||||||||||||||||||||||||||||   ||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  46446324 aagaagactcttccaaaaactagcgtatgccaaaaatagtaacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcac 46446225  T
Q  315 acggctccgtgctt 328  Q
    | |||||| |||||    
T  46446224 aaggctccatgctt 46446211  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 186 - 325
Target Start/End: Original strand, 21884021 - 21884160
Alignment:
Q  186 attgaactaaaattgcagagccctatgtaaagaagactcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggc 285  Q
    |||||||| | |||||||||||||  || || | ||||||| |||||| || |||||||||||    || | || |||||||||||||||||||||||||    
T  21884021 attgaacttatattgcagagccctcggtgaaaaggactctttcaaaaattaacgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggc 21884120  T
Q  286 gaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  21884121 gaaagaatagttcgctatgtgctcatcacacggctccgtg 21884160  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 33891656 - 33891592
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccgtg 33891592  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  270 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 324  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 316
Target Start/End: Complemental strand, 26568441 - 26568347
Alignment:
Q  222 ctcttccaaaaactagcgtatgccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 316  Q
    ||||| |||||| ||||||||||||||    || | || ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  26568441 ctctttcaaaaattagcgtatgccgctttaagtgacgcgcacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 330
Target Start/End: Complemental strand, 5900589 - 5900520
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta 330  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| |||||| ||||    
T  5900589 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgattta 5900520  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 43633443 - 43633480
Alignment:
Q  261 cacacggtattctttagtaaaaggcgaaagaatagttc 298  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttc 43633480  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 2341338 - 2341391
Alignment:
Q  270 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccg 323  Q
    |||||| ||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccg 2341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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