View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-12 (Length: 276)
Name: NF5916-Insertion-12
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 6939302 - 6939053
Alignment:
| Q |
9 |
tcaaggaaatccaatatttaggtaattaataattttgtattttattattgtacaaacactcgcacacacatgttaacttttgatttatattgaatacaat |
108 |
Q |
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| T |
6939302 |
tcaaggaaatccaatttttaggtaattaataattttgtattttattattgtacaaacactc--acacacatgttaacttttgatttatattgaatacaat |
6939205 |
T |
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| Q |
109 |
aggacctggatcgcctactgtaaatgcttcacacagtagctggtttgaaccttagaaaagtgattttacagttcagatttatttatctgattttcacaaa |
208 |
Q |
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| T |
6939204 |
aggacctagatcgcctattgtaaatgcttcacacagtagctgatttaaaccatagaaaagtgattttacagttcagatttatttatctgattttcacaca |
6939105 |
T |
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| Q |
209 |
atttgatttcaattcagccaccgattaaagatcggacggctgagatatgttacagca |
265 |
Q |
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| T |
6939104 |
gtttgatttcagt-----caccgattaaagatcggacggctgagatgtgttacagca |
6939053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 275
Target Start/End: Original strand, 43681907 - 43682067
Alignment:
| Q |
110 |
ggacctggatcgcctactgtaaatgcttcacacagtagctggtttgaaccttagaaaagtgattttacagttcagatttatttatctgattttcacaaaa |
209 |
Q |
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| T |
43681907 |
ggacctagatcgcctgctgtaaatgcttcacgcagtagctgatctgaaccgtagaaaagtgattcaacagttcagatttatttgtccggttttcacacag |
43682006 |
T |
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| Q |
210 |
tttgatttcaattcagccaccgattaaagatcggacggctgagatatgttacagcaggacgctgtt |
275 |
Q |
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| T |
43682007 |
tttgat-----ctcagccaccgattgaggatcggacggctgagatctgttacagcaggacactgtt |
43682067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 5859107 - 5859155
Alignment:
| Q |
222 |
tcagccaccgattaaagatcggacggctgagatatgttacagcaggacg |
270 |
Q |
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| T |
5859107 |
tcagccatcgattaaagatcggacggcggagatatgttacatcaggacg |
5859155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 5859062 - 5859097
Alignment:
| Q |
161 |
tagaaaagtgattttacagttcagatttatttatct |
196 |
Q |
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| T |
5859062 |
tagaaaagtgatttaacagttcagatttatttatct |
5859097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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