View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-3 (Length: 910)
Name: NF5916-Insertion-3
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 1e-86; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 6279099 - 6278929
Alignment:
| Q |
8 |
agacatatcattgttggttgatgtgggtggtggttttggccaaaatttgaatatgataatctccaaatatccttccataaagggtattaattttgatctg |
107 |
Q |
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| T |
6279099 |
agacatatcattgttggttgatgtgggtggtggttttggccaaaatttgaatatgataatctccaaatatccttacataaagggtattaattttgatctg |
6279000 |
T |
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| Q |
108 |
ccaccagtgatagaaaacgctccagattatccaggtatatcttttacattaggtcacctatttactgagcc |
178 |
Q |
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| T |
6278999 |
ccaccagtgatagaaaacgctccagattatccaggtatatcttttacattaggtcatctatttactgagcc |
6278929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 253 - 416
Target Start/End: Complemental strand, 6278854 - 6278691
Alignment:
| Q |
253 |
atagatgatttttaatagaaattcaattactaacataatataatattaacaaaacaaaacatatatgaaagactacctttgaacatgcccatagtatgag |
352 |
Q |
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| T |
6278854 |
atagatgatttttaacagaaattcaattactaacataatataatattaacaaaacaaaacatatatgaaagactacctttgaacatgcccagagtatgag |
6278755 |
T |
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| Q |
353 |
taattttatttgtttatctcctaacaaattcagtacaataaagttagggaaactattaataatt |
416 |
Q |
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| T |
6278754 |
taactttatttgtttatctcctaacaaattcagtacaataaagttagggaaactattaataatt |
6278691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 469 - 627
Target Start/End: Complemental strand, 6278693 - 6278534
Alignment:
| Q |
469 |
attatgtaattatgattttgaaaagtatttaacttatatttttaagaaacannnnnnnatgcacttcgtaagactttgaa-ttaattgatcgataacatc |
567 |
Q |
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| T |
6278693 |
attatgtaattatgattttgaaaagtatttaacttatatttttaagaaacatttttttatgcatttcgtaagactttgaaattaattgatcgataacatc |
6278594 |
T |
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| Q |
568 |
tcaatatgacaatatcctaagacttatttgcaagtttgaagaaaaaaggagtgcagactt |
627 |
Q |
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| T |
6278593 |
tcaatatgacaatttccaaggacttatttacaagtttgaagaaaaagggagtgaagactt |
6278534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 813 - 910
Target Start/End: Complemental strand, 6278291 - 6278192
Alignment:
| Q |
813 |
tttcaaatactcaaacaaagcctaaaaaattcatctatgagtggcatataaatttaaaattttgttatcaggtgggggagga--tgatatgtcccacaca |
910 |
Q |
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| T |
6278291 |
tttcaaatactcaaataaagtctaaaaaattcatatatgagtgatatataaatttaaaattttgttatcacgtgggggaggaattgatatgtcccacaca |
6278192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 677 - 780
Target Start/End: Complemental strand, 6278502 - 6278400
Alignment:
| Q |
677 |
ttgagaactttgagaaagaatggttctagagaattcannnnnnnncataataaaaatttcttctgattaggggaataaaatttattattctctacaaaaa |
776 |
Q |
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| T |
6278502 |
ttgagaactttgaaaaagaatggttccagagaattcatttttcttcataataaaaatttcgtctgattaggg-aataaaatttattattctctacaaaaa |
6278404 |
T |
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| Q |
777 |
taat |
780 |
Q |
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|||| |
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| T |
6278403 |
taat |
6278400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 6283161 - 6283025
Alignment:
| Q |
12 |
atatcattgttggttgatgtgggtggtggttttggccaaaatttgaatatgataatctccaaatatccttccataaagggtattaattttgatctgccac |
111 |
Q |
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| T |
6283161 |
atatcaatattggttgatgttggaggaggaattgggcaaagtttgaatatgataatctctaagtatccttctataaagggcattaattttgatttgcccc |
6283062 |
T |
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| Q |
112 |
cagtgatagaaaacgctccagattatccaggtatatc |
148 |
Q |
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||| ||| || | |||||| ||||||||||||||| |
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| T |
6283061 |
aagttatacaacatgctccaatttatccaggtatatc |
6283025 |
T |
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