View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-4 (Length: 680)
Name: NF5916-Insertion-4
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 276 - 680
Target Start/End: Original strand, 24293672 - 24294069
Alignment:
| Q |
276 |
tgatataacttctgaatgttaactttggactaaataggttctcaaagttaacattctgaaggnnnnnnngtttccttggcataaaaatttaaaaattatc |
375 |
Q |
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| T |
24293672 |
tgatataacttctgaatg----ctttggactaaataggttctcaaagttaacattctgaaggtttttttgtttcgttggcatcaaaatttaaaaaatatc |
24293767 |
T |
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| Q |
376 |
acttttcataaagttgttatacgaagtgtgttattatgagacagaatgttgtatgcatgtaagggtgaaccgtgaaagcaaaataagactcaggtaaatc |
475 |
Q |
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| T |
24293768 |
acttttcataaacttgttatataaa--atgttattatgagacagaatgttgtatgcatccaagggtgaactgtgaaagcaaaataagactcaggtaaatc |
24293865 |
T |
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| Q |
476 |
agtaaaaatacaatgcgacgcgataaaaaatttaatattaaaaatcgcatttccggcagccttggcaccaatttcttgcagccacggatacccgattatt |
575 |
Q |
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| T |
24293866 |
agtaaaaatataatgcgacgcgataaaaaatttaata-taaaaatcgcatttccggctgccttggcaccaatttctggcagccacgggtacccgattatt |
24293964 |
T |
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| Q |
576 |
tttgacaacctcttgcagcaaacagtttcctttctaacatgccaacaacccagggtcaccctcgaaaaagtgacattatcggtgacttttaagcatttct |
675 |
Q |
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| T |
24293965 |
tttgacaacttcttgcagcaaacagtttcctttctaacatgccaacaacccagggtcaccctcgaaaaagtgacattatcggtgacttttaagcatttct |
24294064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 24293403 - 24293604
Alignment:
| Q |
8 |
accaccaacatcaacaaattcataaatgttagttttagaccttcaaattactgttaatttctttataatcctcttactcagtacaattttatcacgagtt |
107 |
Q |
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| T |
24293403 |
accaccaacatcaacaaattcataaatgttagttttagaccttcaaattactgttaatttctttataatcctcttactcagtacaattttatcacgagtt |
24293502 |
T |
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| Q |
108 |
gggcttggttttgtttgatatccaagtgcttcgaaattgggttgcttttcgtgactatta-tttcttttctaatacacccatatatgtgcctcatacttc |
206 |
Q |
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| T |
24293503 |
gggcttggttttgtttgatatccgagtgcttcgaaattgggttgcttttcgtgactattatttttttttctaatacacccatatatgtgcctcatacttc |
24293602 |
T |
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| Q |
207 |
tc |
208 |
Q |
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|| |
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| T |
24293603 |
tc |
24293604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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