View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916-Insertion-5 (Length: 638)
Name: NF5916-Insertion-5
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 254 - 560
Target Start/End: Complemental strand, 21629350 - 21629045
Alignment:
| Q |
254 |
gagtgttctttatcatgatcatctttatattggtcaacatacattttaacatcttcatcaactttcaacatcttcgtcagattaaaacaaaaacaatagt |
353 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||| | |
|
|
| T |
21629350 |
gagtgttttttatcatgatcacctttatattggtcaatatacatttcaacatcttcatcaactttcaacatcttcgccagattaaaaaaaaaa--atact |
21629253 |
T |
|
| Q |
354 |
aaaatatttcagattgaatgtttaatttgccattcatcctcttcttccataatatcttctttaaaaaagaatccaaaaa-tttcaagttaaaagacccta |
452 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21629252 |
gatatatttcagattgaatgtttaatttggtattcatcctcttcttccatattatcttctttaaaaaagaatccaaaaaatttcaagttaaaagacccta |
21629153 |
T |
|
| Q |
453 |
aaatgtatttggcttaaaatataataataccattgcaaccttggtataatcccaaattgataggatatatccactgtttcctaccgaatgatggaacacc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21629152 |
aaatgtatttggcttaaaatataataataccattgcaaccttggtataatcccaaattgataggatatatccactgtttcctaccgaatgatggaacacc |
21629053 |
T |
|
| Q |
553 |
catccaaa |
560 |
Q |
| |
|
|||||||| |
|
|
| T |
21629052 |
catccaaa |
21629045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 573 - 638
Target Start/End: Complemental strand, 21629049 - 21628984
Alignment:
| Q |
573 |
ccaaaattgatgacaaaggctttcacttatatatctttcannnnnnnaatagaaatgaaatctagt |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
21629049 |
ccaaaattgatgacaaaggctttcacttatatatctatcatttttttaatagaaatgaaatctagt |
21628984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 167
Target Start/End: Complemental strand, 21629818 - 21629787
Alignment:
| Q |
136 |
cattttacatcaaactccattaaaaaatgttt |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
21629818 |
cattttacatcaaactccattaaaaaatgttt |
21629787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University