View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-6 (Length: 619)
Name: NF5916-Insertion-6
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-6 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 3209143 - 3208739
Alignment:
| Q |
12 |
aggaagaatctcatg-ctcgaaaaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgta |
110 |
Q |
| |
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||||||||||||||| || |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |||| |
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| T |
3209143 |
aggaagaatctcatggctgaaaaaagtttttgaattgattccagccaaattcattggtttactctataagaaatgacaaccaaaaat-tctgttcctgta |
3209045 |
T |
|
| Q |
111 |
gcc-tatgaatgaagaaaatatagttcatggcttctttttt----ctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgaca |
205 |
Q |
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||| |||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||| |||||||||| || || |
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| T |
3209044 |
gccgtatgaatgaagacaata-agttcatggcttcttttctttctctgttgatataaatttgcaatggtttttattctcattttgccgttatgagtggca |
3208946 |
T |
|
| Q |
206 |
cgaagtgaaaacaaattct-aaatctcactcttttaactgatatctctcttttcca-ttacagattataaatgtgcttgacgggtctgaaaaccctcagt |
303 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||| || |
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| T |
3208945 |
cgaagtgaaaacaaattctaaaatctcactcttttcactgatatctctcttttccatttgcagattgcaaatctgcttgacgggtctgaaaaccctctgt |
3208846 |
T |
|
| Q |
304 |
gcaccaccnnnnnnncacgcctagacaagtttcgggtaatgcctcgctctc--atgtcctttcattattatgctgcttgatgaaatgtagtgtatgtggc |
401 |
Q |
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| T |
3208845 |
gcaccgcccttttttcacgcctcgacaggtctcgggtaatgcctcactctctgatgtcc-ttcagtatcatgctagttgatgaaatgtggtgtatgcggc |
3208747 |
T |
|
| Q |
402 |
tttatatt |
409 |
Q |
| |
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|||||||| |
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| T |
3208746 |
tttatatt |
3208739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 15992270 - 15992663
Alignment:
| Q |
12 |
aggaagaatctcatg-ctcgaaaaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgta |
110 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |
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| T |
15992270 |
aggaagaatctcatggctggaaaaagtttttgaattatttccagccaaattcattggttctctctataagaaatgacaaccaaaaaa-tctgtttctgta |
15992368 |
T |
|
| Q |
111 |
gcctatgaatgaagaaaatatagttcatggcttcttttttctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgacacgaag |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
15992369 |
gcctatgaatgaagaaaatatagttcatggctcctttttt-tgttgatataaatttgcaatagtttctattctca---------tatgaacgacacgaag |
15992458 |
T |
|
| Q |
211 |
tgaaaacaaattct-aaatctcactcttttaactgatatctctcttttccat-tacagattataaatgtgcttgacgggtctgaaaaccctcagtgcacc |
308 |
Q |
| |
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|||||||||||||| ||||||| | |||| |||||||||||| ||||||| | |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
15992459 |
tgaaaacaaattctaaaatctcctttttttcactgatatctcttgtttccatatgcagattgtaaatcggcttgacgggtctgaaaaccctcagtgcact |
15992558 |
T |
|
| Q |
309 |
accnnnnnnncacgcctagacaagtttcgggtaatgcctcgctctc--atgtcctttcattattatgctgcttgatgaaatgtagtgtatgtggctttat |
406 |
Q |
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|| ||||||| ||||||| |||||||||||||| ||||| |||||| |||| ||||||||| ||||| ||||||| ||| | |||||||||| |
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| T |
15992559 |
gcccttttttcacgcctcgacaagtatcgggtaatgcctcactctctgatgtcc-ttcagtattatgctacttgacgaaatgtggtgcaagtggctttat |
15992657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 410 - 617
Target Start/End: Complemental strand, 3208406 - 3208199
Alignment:
| Q |
410 |
aatatttgaatagaaaggtgatcgattctagagaggtgtccatgcatgtttgattttgcgatgggattgttagaatcacggtgagccaccatgattttga |
509 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
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| T |
3208406 |
aatatttgaatagaaaggtgatcgattctagagaggcatccatgcatgtttgattttgcggtgggattgtcagaatcacggtgagccaccttgattttga |
3208307 |
T |
|
| Q |
510 |
caaaagttacacttgtagcttcaataaaatcacggtgtgtcattgtgatttttccaataatgtcaacattgttggattgtagtagtcttttgcaatactt |
609 |
Q |
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|||||| |||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||| | ||| |
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| T |
3208306 |
caaaagctacacttgcagcttcaacaaaatcacggcgtgtcaatgtgatttttccaataatgtctacattgttgtattgcagtagtcttttgccgtgctt |
3208207 |
T |
|
| Q |
610 |
gttaatta |
617 |
Q |
| |
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|||||||| |
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| T |
3208206 |
gttaatta |
3208199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 436 - 617
Target Start/End: Original strand, 15992663 - 15992837
Alignment:
| Q |
436 |
tctagagaggtgtccatgcatgtttgattttgcgatgggattgttagaatcacggtgagccaccatgattttgacaaaagttacacttgtagcttcaata |
535 |
Q |
| |
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|||||||||| ||| |||||||||||||||||| || |||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
15992663 |
tctagagaggcatccctgcatgtttgattttgcggtgcgattgtcagaatc-------gccaccgtgattttgacaaaagctacacttgtagcttcaata |
15992755 |
T |
|
| Q |
536 |
aaatcacggtgtgtcattgtgatttttccaataatgtcaacattgttggattgtagtagtcttttgcaatacttgttaatta |
617 |
Q |
| |
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||||||||| ||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| | ||||||||||| |
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| T |
15992756 |
aaatcacggcatgtcactgtgatttttccattaatgtctacattgttggattttagtagtcttttgcagtgcttgttaatta |
15992837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 37561556 - 37561597
Alignment:
| Q |
482 |
gaatcacggtgagccaccatgattttgacaaaagttacactt |
523 |
Q |
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| T |
37561556 |
gaatcacggtgagccaccatgattttgccaaaagctacactt |
37561597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 37491933 - 37491994
Alignment:
| Q |
9 |
tagaggaagaatctcatgctcgaaaaagtttttgaattatttccagccaaattcataggttt |
70 |
Q |
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| T |
37491933 |
tagaggaagaatctcatgctcgaaaaagtttttgaattatttccagccaaattcataggttt |
37491994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 539
Target Start/End: Complemental strand, 44279120 - 44279062
Alignment:
| Q |
481 |
agaatcacggtgagccaccatgattttgacaaaagttacacttgtagcttcaataaaat |
539 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||| ||| ||| ||||| |||||||| |
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| T |
44279120 |
agaatcacggtgtgccaccgtgattttgacaaaagctaccattggagctttaataaaat |
44279062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 325 - 545
Target Start/End: Complemental strand, 23720738 - 23720513
Alignment:
| Q |
325 |
tagacaagtttcgggtaatgcctcgctctc----atgtcctttcattattatgctgcttgatgaaatgtagtgtatgtggctttatattaatatttgaat |
420 |
Q |
| |
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||||||||| |||||||||||| |||||| |||||| || | |||||||| ||| || ||||||||||||| |||||| ||||||||||||||| |
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| T |
23720738 |
tagacaagtatcgggtaatgccaagctctctttgatgtccctttaacattatgctaattggtggaatgtagtgtatggggctttgtattaatatttgaat |
23720639 |
T |
|
| Q |
421 |
agaaaggtgatcgattct--agagaggtgtccatgcatgtttgattttgcgatgggattgttagaatcacggtgagccaccatgattttgacaaaagtta |
518 |
Q |
| |
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|||||||| |||||| |||||| | |||||||||| ||||| |||||||| || ||||||||||| ||| |||||||||| ||| ||| |
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| T |
23720638 |
cagaaggtgatggattctaaagagagataaatgtgcatgtttggatttgcagtgggattggtataatcacggtgatcca--gtgattttgaccaaaatta |
23720541 |
T |
|
| Q |
519 |
cac-ttgtagcttcaataaaatcacggt |
545 |
Q |
| |
|
||| |||||| ||||| ||||||||||| |
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| T |
23720540 |
cactttgtagtttcaacaaaatcacggt |
23720513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 20679550 - 20679506
Alignment:
| Q |
474 |
gattgttagaatcacggtgagccaccatgattttgacaaaagtta |
518 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||| |||| |||| |
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| T |
20679550 |
gattgttagaattacggtgagccatcatgattttggcaaaggtta |
20679506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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