View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-7 (Length: 606)
Name: NF5916-Insertion-7
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-7 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 174 - 606
Target Start/End: Complemental strand, 32267846 - 32267416
Alignment:
| Q |
174 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
273 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
274 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgg |
373 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt-ttttattttttatttttcctac----cgtgggttctaaaattcggcagttttgatagtacattgaaacgttgg |
32267652 |
T |
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| Q |
374 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggtttgtacctaacaaaggtgtgatcg-nnnnnnnnnaatataag |
472 |
Q |
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| T |
32267651 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggttggtacctaacaaaggtgtgatcgttttttttttaatataag |
32267552 |
T |
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| Q |
473 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccagtgtgcagactttatagtcaaactaggagcttcaaatgatgatgatct |
572 |
Q |
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| T |
32267551 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccggtgtgcatactttgtagccaaactaggagcttcaaatgatgatgatct |
32267452 |
T |
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| Q |
573 |
gactattcactcc--caccctctagagggccttctt |
606 |
Q |
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| T |
32267451 |
gactaatcactcccacaccatccagagggccttctt |
32267416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 32267987 - 32267860
Alignment:
| Q |
8 |
acttgaatttaaatacatgaatgatttgttcaatatttatgtacaggttgaaggaaactatatatcataaaactttctctactaattcgaacaatatcat |
107 |
Q |
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| T |
32267987 |
acttgaatttaaatacatgaatgatttgttcaatatttatgtacaggttgaaggaaactatatatcataaaactttctctactaattcgaacaatatcat |
32267888 |
T |
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| Q |
108 |
aacactttcttacaattatttatcgtgt |
135 |
Q |
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| T |
32267887 |
aacactttcttacaattatttatcgtgt |
32267860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 79 - 292
Target Start/End: Complemental strand, 32272045 - 32271836
Alignment:
| Q |
79 |
actttctctactaattcgaacaatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaa |
178 |
Q |
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| T |
32272045 |
actttttctactaattcgaacaatatcataacactttcttacaattatttgttgtgtcattttggaactactatttagtgatttcttcaagtttctatag |
32271946 |
T |
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| Q |
179 |
atatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattac |
276 |
Q |
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| T |
32271945 |
atatga---ttcatgaata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tac |
32271852 |
T |
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| Q |
277 |
atattcggtggatgta |
292 |
Q |
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| T |
32271851 |
atattcggtggatgta |
32271836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 32271809 - 32271744
Alignment:
| Q |
327 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcct |
395 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttgata---cattcaaacgttgggccatggtaaaatttcagtcct |
32271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 14446615 - 14446684
Alignment:
| Q |
339 |
aattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcctaaaatttgatgtgtca |
411 |
Q |
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| T |
14446615 |
aattcggcacttatgata---cattcaaacgttggaccatggtaaaatttcagtccttcaatttgaggtgtca |
14446684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 79 - 225
Target Start/End: Complemental strand, 48170069 - 48169925
Alignment:
| Q |
79 |
actttctctactaattcgaacaatatcataacactttcttacaattatttatcgtgtcatttaggaattactatttagtgattccttctaggttctacaa |
178 |
Q |
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| T |
48170069 |
actttctctactaatttgaacaatattataacagtttcttacaattatttatcatgtctttttgaaactaccatccaatgattccttctaggttttataa |
48169970 |
T |
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| Q |
179 |
atatgattcttcatgaata-gttttggagaatggataaaagtgttcat |
225 |
Q |
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| T |
48169969 |
atatga---ttcatgaatattttttggagaaaggactaaagtgttcat |
48169925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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