View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916-Insertion-8 (Length: 495)

Name: NF5916-Insertion-8
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916-Insertion-8
NF5916-Insertion-8
[»] chr5 (8 HSPs)
chr5 (8-495)||(25095958-25096425)
chr5 (8-495)||(25153928-25154395)
chr5 (272-485)||(25098745-25098955)
chr5 (272-485)||(25157835-25158045)
chr5 (10-142)||(25095070-25095202)
chr5 (10-142)||(25153040-25153172)
chr5 (272-451)||(31250794-31250970)
chr5 (390-419)||(32200143-32200172)
[»] chr1 (2 HSPs)
chr1 (272-462)||(26857730-26857917)
chr1 (390-453)||(3330527-3330590)
[»] chr8 (1 HSPs)
chr8 (272-458)||(18001937-18002120)
[»] chr6 (1 HSPs)
chr6 (272-450)||(10383237-10383411)
[»] chr4 (4 HSPs)
chr4 (272-458)||(7635687-7635870)
chr4 (390-458)||(50371648-50371716)
chr4 (272-448)||(5883078-5883252)
chr4 (390-458)||(19719208-19719276)
[»] chr3 (5 HSPs)
chr3 (272-457)||(30375877-30376059)
chr3 (390-439)||(30406136-30406185)
chr3 (390-470)||(44121369-44121450)
chr3 (272-320)||(25131802-25131850)
chr3 (393-434)||(4555754-4555795)
[»] chr7 (3 HSPs)
chr7 (390-456)||(33879817-33879883)
chr7 (390-458)||(8914678-8914746)
chr7 (395-443)||(9083628-9083676)
[»] scaffold0008 (2 HSPs)
scaffold0008 (399-440)||(42171-42212)
scaffold0008 (272-320)||(42047-42095)


Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 495
Target Start/End: Complemental strand, 25096425 - 25095958
Alignment:
Q  8 accagccttattgtgaatcatcaagaaagcaacatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgc 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25096425 accagccttattgtgaatcatcaagaaagcagcatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgc 25096326  T
Q  108 tcatgaactatacaactcgcgttttagcttcaatagctcgccaaatgatccaatgccggtccttattcaaacgttgcagcactgcaaagagattttggtg 207  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  25096325 tcataaactatacaactcgcgtttcagcttcaatagctcgccaaatgatccaatgccggtccttattcaaacgttgcagcactgcaaag----------- 25096237  T
Q  208 taagaaaagttttgaggacagttacctttatcatggagtcaagtctgagttggtacaatggtccttatttggaaggaaaggaatgatagacttttccgaa 307  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25096236 ---------ttttgaggacagttacctttatcatggagtcaagtctgagttggtacaatggtccttatttggaaggaaaggaatgatagacttttccgaa 25096146  T
Q  308 ccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataaagcaaaatctgtaattaattttcattataagtttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25096145 ccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataaagcaaaatccgtaattaattttcattataagtttca 25096046  T
Q  408 tgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgctatat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25096045 tgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgctatat 25095958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 495
Target Start/End: Complemental strand, 25154395 - 25153928
Alignment:
Q  8 accagccttattgtgaatcatcaagaaagcaacatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgc 107  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154395 accagccttattgtgaatcatcaagaaagcagcatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgc 25154296  T
Q  108 tcatgaactatacaactcgcgttttagcttcaatagctcgccaaatgatccaatgccggtccttattcaaacgttgcagcactgcaaagagattttggtg 207  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  25154295 tcataaactatacaactcgcgtttcagcttcaatagctcgccaaatgatccaatgccggtccttattcaaacgttgcagcactgcaaag----------- 25154207  T
Q  208 taagaaaagttttgaggacagttacctttatcatggagtcaagtctgagttggtacaatggtccttatttggaaggaaaggaatgatagacttttccgaa 307  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154206 ---------ttttgaggacagttacctttatcatggagtcaagtctgagttggtacaatggtccttatttggaaggaaaggaatgatagacttttccgaa 25154116  T
Q  308 ccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataaagcaaaatctgtaattaattttcattataagtttca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25154115 ccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataaagcaaaatccgtaattaattttcattataagtttca 25154016  T
Q  408 tgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgctatat 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154015 tgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaactactgatgtaaataattgctatat 25153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 272 - 485
Target Start/End: Complemental strand, 25098955 - 25098745
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||    
T  25098955 ttattttgaaggaaaggaatgatagacttttccaaaccaaagaaaactcatcttcacagcttttggagtacatcaggctacttacttttccgtgttataa 25098856  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaac 471  Q
    |||||||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25098855 agcaaaatctgtaat---tttttattataagttttatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttctgttgaac 25098759  T
Q  472 tactgatgtaaata 485  Q
    |||| |||||||||    
T  25098758 tactaatgtaaata 25098745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 272 - 485
Target Start/End: Complemental strand, 25158045 - 25157835
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||||    
T  25158045 ttattttgaaggaaaggaatgatagacttttccaaaccaaagaaaactcatcttcacagcttttggagtacatcaggctacttacttttccgtgttataa 25157946  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttatgttgaac 471  Q
    |||||||||||||||   |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25157945 agcaaaatctgtaat---tttttattataagttttatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttatttctgttgaac 25157849  T
Q  472 tactgatgtaaata 485  Q
    |||| |||||||||    
T  25157848 tactaatgtaaata 25157835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 25095202 - 25095070
Alignment:
Q  10 cagccttattgtgaatcatcaagaaagcaacatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgctc 109  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  25095202 cagccttattatgaatcatcaagaaagcaacatctttgttactttcacgttgtattgattgagaattagacaagttcaaaagtaatgctactgcttgctc 25095103  T
Q  110 atgaactatacaactcgcgttttagcttcaata 142  Q
    || ||||||||||||||||||| ||||||||||    
T  25095102 ataaactatacaactcgcgtttcagcttcaata 25095070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 25153172 - 25153040
Alignment:
Q  10 cagccttattgtgaatcatcaagaaagcaacatctatgttactttcacgttgtattgattgagcattagacaagttcaaaagtaatgctattgcttgctc 109  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  25153172 cagccttattatgaatcatcaagaaagcaacatctttgttactttcacgttgtattgattgagaattagacaagttcaaaagtaatgctactgcttgctc 25153073  T
Q  110 atgaactatacaactcgcgttttagcttcaata 142  Q
    || ||||||||||||||||||| ||||||||||    
T  25153072 ataaactatacaactcgcgtttcagcttcaata 25153040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 451
Target Start/End: Original strand, 31250794 - 31250970
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||   |   ||||||| |||| |||| ||||| ||| ||||| ||||  ||||    
T  31250794 ttatatggaaggaaaggaacgaaagacttttccgaaccaaagaaaactcctttgttcagcttttggagaacattaggcttctttctttttcgtggcataa 31250893  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaat 451  Q
    |||||||| ||||   | ||   ||| ||||| ||||||||||||||| ||||| ||||||||||||||||| |||||||    
T  31250894 agcaaaatttgta---acttcctattttaagtatcatgattggtgccataaccctttcttatgtttgggtatgggctaat 31250970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 32200143 - 32200172
Alignment:
Q  390 ttttcattataagtttcatgattggtgcca 419  Q
    ||||||||||||||||||||||||||||||    
T  32200143 ttttcattataagtttcatgattggtgcca 32200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 272 - 462
Target Start/End: Complemental strand, 26857917 - 26857730
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||| |||| |||||||||||| |||||| ||| ||||||  ||||    
T  26857917 ttatttggaaggaaaggaacgataaactttttcgaaccaaagaaaactcaccttcgcaacttttggagtacatcagtctactttcttatccgtggcataa 26857818  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgttattt 462  Q
    |||||||| ||||||   |||||||||||||||| ||||||||||| ||||||| || ||| |||||||||| ||||||||||||||||||    
T  26857817 agcaaaatttgtaat---ttttcattataagttttatgattggtgctagaacccgtttttaagtttgggtatgggctaatcattgttattt 26857730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 3330590 - 3330527
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatca 453  Q
    |||| ||||||||||||||||||||||||| ||| | || || |||||||||||||||||||||    
T  3330590 ttttaattataagtttcatgattggtgccaaaactcgtttttgtgtttgggtataggctaatca 3330527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 272 - 458
Target Start/End: Original strand, 18001937 - 18002120
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||| ||||  ||  ||| ||| |||| || ||||||| ||| ||||| | ||  ||||    
T  18001937 ttatttggaaggaaatgaacgatagacttttctgaaccaaagaaagctcatgtcgtcagattttggagaacctcaggctcctttctttttcttggcataa 18002036  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 458  Q
    |||||||| ||    ||||||| ||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  18002037 agcaaaatttgc---taatttttattataagtttcatgattggtgccagaacctgttcttatatttgggtataggctaatcattgtt 18002120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 450
Target Start/End: Original strand, 10383237 - 10383411
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||| ||||| |   ||||  |||| |||||| ||| ||| ||| | |||| |||||    
T  10383237 ttatttgaaaggaaaggaatgctagacttttccgagccaaagaaaacacaccttctt-gcttctggagaacatcatgcttctttcttattcgtggtataa 10383335  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaa 450  Q
    ||| |||| ||||||| ||   |||||||||||||||||||||||||| ||||  |||| ||||||||| |||||||||    
T  10383336 agctaaatttgtaatttat---cattataagtttcatgattggtgccaaaacctgttctcatgtttgggaataggctaa 10383411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 458
Target Start/End: Original strand, 7635687 - 7635870
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    |||||||||||||||||||||| ||||| ||| |||| ||| | | ||||  ||| ||||||| |||| |||| ||||||||  |||||   ||  ||||    
T  7635687 ttatttggaaggaaaggaatgacagactcttcagaacaaaacagagctcatttcctcagcttttggagaacattaggctactctctttttattggcataa 7635786  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 458  Q
    |||||||| ||    || |||| |||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||    
T  7635787 agcaaaatgtgc---tagttttaattataagtttcatgattggtgtcagaactcgttcttgtgtttgggtataggctaatcattgtt 7635870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 50371716 - 50371648
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 458  Q
    |||| ||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||    
T  50371716 ttttaattataagtttcatgattggtgccataatccgttcttgtgtttgggtataggctaatcattgtt 50371648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 272 - 448
Target Start/End: Complemental strand, 5883252 - 5883078
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaag-aaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttata 370  Q
    ||||||||||||||| || ||||||| |||||  || ||||  |||||||   ||| ||||||| |||| |||| ||||||||  |||||   ||  |||    
T  5883252 ttatttggaaggaaatgattgatagaattttcaaaaacaaaacaaaactcctttccccagcttttggagaacattaggctactctctttttattggcata 5883153  T
Q  371 aagcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggct 448  Q
    ||||||||| ||    || |||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  5883152 aagcaaaatttgc---tagttttaattataagttacatgattggtgccagaacccgttcttgtgtttgggtataggct 5883078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 19719208 - 19719276
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 458  Q
    |||| ||||||||||| |||||||||||| |||||  ||||| ||||||||||||| ||||||||||||    
T  19719208 ttttaattataagttttatgattggtgcccgaacctgttcttgtgtttgggtatagactaatcattgtt 19719276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 272 - 457
Target Start/End: Complemental strand, 30376059 - 30375877
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactcacctccgcagctttaggagtacatcaggctacttacttttccgtgttataa 371  Q
    ||||||||||||||| |||||||||| |||| | ||||||| ||| |||   | | || |||| |||| |||| ||||||||  ||||| | ||  ||||    
T  30376059 ttatttggaaggaaatgaatgatagaatttttcaaaccaaacaaagctccttttctcaacttttggagaacattaggctactctctttttcatggcataa 30375960  T
Q  372 agcaaaatctgtaattaattttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgt 457  Q
    |||||||| ||    || |||| |||||||||||  |||||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  30375959 agcaaaatttgc---tagttttaattataagttttttgattggtgccagaacccgttcttgtgtttggatataggctaatcattgt 30375877  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 30406185 - 30406136
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgg 439  Q
    |||||||||||||||||||||||||||||||||||| || | ||||||||    
T  30406185 ttttcattataagtttcatgattggtgccagaaccctttttcatgtttgg 30406136  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 44121450 - 44121369
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt-atttatgttgaa 470  Q
    |||| ||| |||||||||||||| |||| ||||||  ||||||||||| ||||||| |||||||||||| |||| |||||||    
T  44121450 ttttaattttaagtttcatgattagtgctagaacctgttcttatgtttaggtatagtctaatcattgttcatttttgttgaa 44121369  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 25131850 - 25131802
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactc 320  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  25131850 ttatttggaaggaaaggaacgacagacttttctgaaccaaagaaaactc 25131802  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 4555754 - 4555795
Alignment:
Q  393 tcattataagtttcatgattggtgccagaaccccttcttatg 434  Q
    |||||||| |||||||||||||||||| ||||| ||||||||    
T  4555754 tcattatatgtttcatgattggtgccataaccctttcttatg 4555795  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 456
Target Start/End: Complemental strand, 33879883 - 33879817
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattg 456  Q
    |||| |||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||    
T  33879883 ttttaattataagtttcatgattggtggcagaatccgttcttgtgtttaggtataggctaatcattg 33879817  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 8914746 - 8914678
Alignment:
Q  390 ttttcattataagtttcatgattggtgccagaaccccttcttatgtttgggtataggctaatcattgtt 458  Q
    |||| ||||||||||| |||||||||| |||||| | ||||| |||||||||||||| |||||||||||    
T  8914746 ttttaattataagttttatgattggtgtcagaactcgttcttgtgtttgggtataggttaatcattgtt 8914678  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 9083676 - 9083628
Alignment:
Q  395 attataagtttcatgattggtgccagaaccccttcttatgtttgggtat 443  Q
    ||||||| ||||||||||||||||| |||||||| |  |||||||||||    
T  9083676 attataattttcatgattggtgccataaccccttttgttgtttgggtat 9083628  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Original strand, 42171 - 42212
Alignment:
Q  399 taagtttcatgattggtgccagaaccccttcttatgtttggg 440  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  42171 taagtttcatgattggtgtcagaaccctttcttatgtttggg 42212  T

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Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 42047 - 42095
Alignment:
Q  272 ttatttggaaggaaaggaatgatagacttttccgaaccaaagaaaactc 320  Q
    |||||||||| |||| |||  ||||||||||||||| ||||||||||||    
T  42047 ttatttggaaagaaaagaacaatagacttttccgaagcaaagaaaactc 42095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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