View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916-Insertion-9 (Length: 457)
Name: NF5916-Insertion-9
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916-Insertion-9 |
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| [»] scaffold0856 (1 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Original strand, 4077 - 4525
Alignment:
| Q |
9 |
catctgaaaatcctgagatgtccaagtctgatgatagctttatgggaagacaatagtccaagctggaccttttctctaataagatggaaatttataaaga |
108 |
Q |
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| T |
4077 |
catctgaaaatcctgagatgtccaagtctgatgatagctttatgggaagacaatagtccaagctggaccttttctataataagatggaaatttataaaga |
4176 |
T |
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| Q |
109 |
catgcttggatctttcatgaaatgtgggattgtgagctaagtagatggaggcgggtttgtcaaaagtaatgcagaaatcttcaaacacnnnnnnnctgta |
208 |
Q |
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| T |
4177 |
catgcttggatctttcatgaaatgtgggattgtgagctaagtagatggaggcgggtttgtcaaaagtaatgcagaaatcttcaaacagaaaaaaactgta |
4276 |
T |
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| Q |
209 |
atcttctgatggcggcctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggta |
308 |
Q |
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| T |
4277 |
atcttctgatggtggcctggtagtgaatgaacttgttggttgaggtttggagacatgttgactcaattgtcggatggtgaaagagataactgaccaggta |
4376 |
T |
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| Q |
309 |
gtaggttaagtatacaattcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccgattctttgtcaatct |
408 |
Q |
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| T |
4377 |
gtaggttaagtatacaattcatctacacttggattcatgatcatcaaatacaaatcatgtttcaactcaacccactgccgaaccggttctttgtcaatct |
4476 |
T |
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| Q |
409 |
gcatccattgtaggctaggacatatttctaattaagattctacctcctc |
457 |
Q |
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| T |
4477 |
gcatccattgtaggctaggacatatttctaattaagattctacctcctc |
4525 |
T |
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