View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_1 (Length: 827)
Name: NF5916_high_1
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Complemental strand, 23291632 - 23290971
Alignment:
| Q |
18 |
acttgaattatctttcggattttgctcatctcactttgaaattgctcaaaatatatacccagtgacagttgtcgctaactgttgtttgacttttaaacaa |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
23291632 |
acttgaattatcttttggattttgctcatctcactttgaaattactcaaattatac-cccagtgacagttgtcattaactgttgtttgacttttaagcaa |
23291534 |
T |
|
| Q |
118 |
caattaattctcgttggacactttt-agattagttgtccaacgacaattaattactgcattcaaccgaacggcagttaatgcggctaaggtatgttttta |
216 |
Q |
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||||||||| ||||||||||||||| |||| |||||| |||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23291533 |
caattaattttcgttggacactttttagataagttgtttaacgacaattaactaccgcattcaaccgaacgggagttaatgcggctaaggtatgttttta |
23291434 |
T |
|
| Q |
217 |
agtaatttcagaaatgagatgagcaatattcgtatctttcaagcgctttggatgacatggttccgagtcaaatgaaaaggatggcatgcttctgggccat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
23291433 |
agtaatttcagaaatgagatgagcaatattcgtatctttcaaccgctttggatggcatggttccgagccatatgaaaaggatggcatgcttctgggccat |
23291334 |
T |
|
| Q |
317 |
atggaaagaaagaagaaacatagtttttggccgcgcgcgaagaatcaacagtgccgcaattaactgatcacattagtactatatcttggtggtagtaaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23291333 |
atggaaagaaagaagaaacatagtttttggccgcacgcgaagaatcaacagtgcagcaattaactgatcacattagtactatatactggtggtagtaaaa |
23291234 |
T |
|
| Q |
417 |
agcaggaatctttaattttgcttatggtttgaataaatggtggtttaacccttcaagttgtgctagttcttgtttaaacttttggctggtttaagacttc |
516 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23291233 |
agcaggaatctctaattttgcttatggtttgaataaatggtggtttaacccttgaagttgtgctagttcttgtttaaacttttggctggtttaagacttc |
23291134 |
T |
|
| Q |
517 |
gcctcttgtctgattattgcttttctgggcacaccttattcttagaatagatctttgacatgttctttttggcttttgtaaagaaataaataaaattaag |
616 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23291133 |
gccttttgtctgattattgcttttctgggcacaccttattcttagaatagatctttgacatgttctttttggcttttgtaaagaaataaataaaattaag |
23291034 |
T |
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| Q |
617 |
tttccaatttagttgcgggttcaaagacttgtagcttccacacattcgacaagactccataga |
679 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23291033 |
tttccaatttagttgcgggttcaaagacttgtagcttccacacattcgacaagactccataga |
23290971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 730 - 817
Target Start/End: Complemental strand, 23290959 - 23290872
Alignment:
| Q |
730 |
atatcacacttgatgcttatattaaacaatattcattttaaaatggagggagtaactttttgggcttatctaatttatctgtgctgct |
817 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |
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| T |
23290959 |
atatcacacttgatgcttatatttaacgatattcattttaaaatggagtgaataactttttgggcttatctaatttatctgtggtgct |
23290872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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