View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_high_15 (Length: 478)
Name: NF5916_high_15
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 462
Target Start/End: Original strand, 38873835 - 38874291
Alignment:
| Q |
8 |
ccaagaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38873835 |
ccaacaatattttctccatacaatacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactaccaaccac |
38873934 |
T |
|
| Q |
108 |
attaattctctccttatattttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgc |
207 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38873935 |
attaattctc--cttattttttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgc |
38874032 |
T |
|
| Q |
208 |
tgttccttctcacttacttgtgcttctccattcttgtaattgctgcaccacatgctgctttaagattcattgtagcagtaactcaagtgttgcaacatga |
307 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38874033 |
tgttccttctcacctacttgtgtttctcca-tcttgtaattgctgcaccacatgctgctttaagattcatagtagcagtaactcaagtgttgcaacatga |
38874131 |
T |
|
| Q |
308 |
gaataaaaaga---accagcgtagaattgtaaagaaacacattgctgaataaatttcaacacattgcagttcaaggccatattttttatagactagatag |
404 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
38874132 |
gtccaaaaagaaccaccagcgtagaattgtaaggaaacacattgctgaataaatttcaacacattgcagttcaaggccattttttttatagactagttag |
38874231 |
T |
|
| Q |
405 |
aataaggtaactaaaacac--agaaaaattgagcataaatttgtgcaggagtgatttgtt |
462 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38874232 |
aataaggtaactaaaacacatagaaaaattgagcataaatttgtgcaggagtgatttgtt |
38874291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 31 - 271
Target Start/End: Complemental strand, 38776917 - 38776677
Alignment:
| Q |
31 |
tacacaagaggaatttgatgggaatataaaaggcgggttctcttggttgaaccgccgatgatcgaactacca---accacattaattctctccttatatt |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| ||||| || |
|
|
| T |
38776917 |
tacacaagaggaatttaatgggaatataaaaggcgggttctcttggttgaaccgcctatgatcgaactaccaccaaccacgttaattctc--cttatttt |
38776820 |
T |
|
| Q |
128 |
ttgaatctgagttaagtaccactaatgccagttgagtttcttgttcttctctttttaccaccactggttcttttttctgctgttccttctcacttacttg |
227 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
38776819 |
ttgaatctgacttaagtaccactaatgccagttgagtttcctgttcttctgtttttaccaccactggttcttttttctgttgttccttctcatctacttg |
38776720 |
T |
|
| Q |
228 |
tgcttctccattcttgtaattgctgcaccacatgctgctttaag |
271 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38776719 |
tgcttctcca-tcttgcaattgctgcaccacatgctgctttaag |
38776677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 266 - 406
Target Start/End: Complemental strand, 38776550 - 38776409
Alignment:
| Q |
266 |
tttaagattcattgtagcagtaactcaagtgttgcaacatgagaataaaaagaaccagcgtagaattgtaaagaaacacattgctgaataaatttcaaca |
365 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||| |
|
|
| T |
38776550 |
tttaagattcatagtagcagtaactcatgtgttgcaacatgagtctaaaaagaaccagcgtagaattgtaaggaaacgcatttctgaatagattccaaca |
38776451 |
T |
|
| Q |
366 |
cattgcagttcaaggccatattttt-tatagactagatagaa |
406 |
Q |
| |
|
|| ||||||| |||||||| ||||| |||||||||||||||| |
|
|
| T |
38776450 |
cactgcagttgaaggccatttttttatatagactagatagaa |
38776409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 38783340 - 38783302
Alignment:
| Q |
424 |
agaaaaattgagcataaatttgtgcaggagtgatttgtt |
462 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
38783340 |
agaaaaattgaacatacatttgtgcaggagtgatttgtt |
38783302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 38783514 - 38783453
Alignment:
| Q |
330 |
attgtaaagaaacacattgctgaataaatttcaacacattgcagttcaaggccatatttttt |
391 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||||| |||| ||| |||||| |
|
|
| T |
38783514 |
attgtaaggaaaggcattgctgaataaatttcaacacatcacagttgaaggtcatttttttt |
38783453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University