View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_17 (Length: 469)
Name: NF5916_high_17
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 7903912 - 7903471
Alignment:
| Q |
13 |
aatattgatgtactaatgatggtgcataatattcaagttgtgagcaaaaatggaaaaaaggaacacaccacccacatacaacaacttgaagtgttattgt |
112 |
Q |
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| T |
7903912 |
aatattgatgtactaatgatggtgcataatattcaagttgtgagcaaaaatggaaaaaaagaacacaccacccacatacaacaacttgaagtgttattgt |
7903813 |
T |
|
| Q |
113 |
cattccaattgattgcttgannnnnnnncttcttcaattcacgaatcattattccattaaagataagaagaatactagtattaggaagtgtaatnnnnnn |
212 |
Q |
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| T |
7903812 |
cattccaattggttgcttaacttcttttcttcttcaattcacgaatcattattccattaaagataagaagaatactagtattaggaagtgtaacaaaaaa |
7903713 |
T |
|
| Q |
213 |
nnnn-cttgttacttgtggcactagagcatagctttaaagatcaaaaggggctttgaaattgaaatgtattaaatgactgatatagaagatgcaggaaga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7903712 |
aaaaacttgttacttgtggcactagagcatagctttaaagatcaaaaggggctttgaaattgaaatgtattaaatgactgatatagaagatgcaggaaga |
7903613 |
T |
|
| Q |
312 |
atctaagctaatagactagacagagacaccactcaggcacccaacattacaagcattgattggtgatggctactaccaagtcaagttgcaatagaaaact |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7903612 |
ctctaagctaatagactagacagagacaccactcaggcacccaacattacaagcattgattggtgatggctactaccaagtcaagttgcaatacaaaact |
7903513 |
T |
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| Q |
412 |
accaatcctggctaacaattactaagccttgcaataaggaac |
453 |
Q |
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| T |
7903512 |
accaatcctggctaacacttactaagccttgcaataaggaac |
7903471 |
T |
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