View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_20 (Length: 445)
Name: NF5916_high_20
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 127 - 427
Target Start/End: Complemental strand, 44935235 - 44934937
Alignment:
| Q |
127 |
aagggcaactctaggctaaaagtaggagagaatcaattaaacaaagactggccatcattggaagagaagactaaaaacggtccacgtcgtactgacaaca |
226 |
Q |
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| T |
44935235 |
aagggcaactctgggctaaaagtaggagagaatcaattaaacaaagactggccatcattggaagagaagactaaaatcggtccaggtcgtactgacaaca |
44935136 |
T |
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| Q |
227 |
ttccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttctttggtattgaaaatgtacaatac |
326 |
Q |
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| T |
44935135 |
ttccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaatacttttctttggtattgaaaatgtacaatac |
44935036 |
T |
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| Q |
327 |
cattaacgtaagaaatatgcttcaaagggagaatgtcattcccggtggaactcatgtatgtagctaaagaagtctattctagagctatacaaaaccaaat |
426 |
Q |
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| T |
44935035 |
cattaacgtaagaaatatccttcaaagggagaatgtcattcccggtggaa--cctgtatgtagctaaagaagtctattctagagctatacaaaaccaaat |
44934938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 44935359 - 44935284
Alignment:
| Q |
23 |
gctgttccatttgatcattttttgctggt-ctatcgtggcctcccacgttttgtaaggaattaaatctagttataa |
97 |
Q |
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| T |
44935359 |
gctgttccatttgatcattttttgctagttctatcgttgcctcccacgttttgtaaggaattaaatttagttataa |
44935284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 44925329 - 44925238
Alignment:
| Q |
212 |
gtcgtactgacaacattccattttggattgaacaatggaaaaaccatggcacatgctcagtgtccattttggatcaggttcaataattttct |
303 |
Q |
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| T |
44925329 |
gtcgtattgacaaccttggattttggggtgaacaatggatactgcatgggacatgctcagtgtccatgttggatcaatttcaatacttttct |
44925238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 44925738 - 44925676
Alignment:
| Q |
23 |
gctgttccatttgatcattttttgc-tggtctatcgtggcctcccacgttttgtaaggaatta |
84 |
Q |
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| T |
44925738 |
gctgttcaatttgatcattttttgcttgttctatcatggcctccagcgttttgcaaggaatta |
44925676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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