View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_21 (Length: 428)
Name: NF5916_high_21
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 39882569 - 39882161
Alignment:
| Q |
1 |
gatcatgacgtgtggtgtgggtgtggcaactcattttaattctctattaattaataggtttttgtataaagaaatttgtggatttaggggtgttccacga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39882569 |
gatcatgacgtgtggtgtgggtgtggcaactcattttaattctctattaat----agttttttgtataaggaaatttgtggatttaggggtgttccacga |
39882474 |
T |
|
| Q |
101 |
gagattagaataagaggggaaacctgattttctactactttgatcattaatgcaaagaaagggaaggaagaatgagtgagaataatttggacctaatatg |
200 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39882473 |
gagattagagtaagaggggaaacttgattttctactactttgatcattaatgcaaagaaagggaaggaagaacgagtgagaataatttggacctaatatg |
39882374 |
T |
|
| Q |
201 |
aaccaaatagaatatcgtatgacataaaggcaattcatttgctacactattgcttgtacgtggaactaagaggaaaaaggtgcgggctgacttttaaaat |
300 |
Q |
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| T |
39882373 |
aaccaaatagaatatcgtatgacataaaggcaattcatttgctacactattgcttgtacgtggaactaagaggaaaaaggtgagggctgacttttaaaat |
39882274 |
T |
|
| Q |
301 |
gtgtacatggaatggaattgttactattaatttcttctttattttgaaagtgaataaagtagggaattacaacggagaaggagagatatgaaactaaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39882273 |
gtgtacatggaatggaattgttactattaatttcttctttattttgaaagtgaataaagtagggaattacaacggagaaggagagatatgaaactaaaat |
39882174 |
T |
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| Q |
401 |
gagatgtatgaat |
413 |
Q |
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| T |
39882173 |
gagatgtatgaat |
39882161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 11037019 - 11037171
Alignment:
| Q |
1 |
gatcatgacgtgtggtgtgggtgtggcaactcattttaattctctattaattaataggtttttgtataaagaaatttgtggattta-ggggtgttccacg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||| |||||| |
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| T |
11037019 |
gatcatgacgtgtggtgtgggtgtggcaactcattttcattctct----tttaataggtttttgtataaagaaatttgaggatttagggggtggtccacg |
11037114 |
T |
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| Q |
100 |
agagattagaataagaggggaaacctgattttctactactttgatcattaatgcaaa |
156 |
Q |
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|||||||||| ||||||||||||| |||||| |||||||| |||||||||| |||| |
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| T |
11037115 |
agagattagagtaagaggggaaacttgatttcctactactgggatcattaatacaaa |
11037171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 13164041 - 13164193
Alignment:
| Q |
1 |
gatcatgacgtgtggtgtgggtgtggcaactcattttaattctctattaattaataggtttttgtataaagaaatttgtggattta-ggggtgttccacg |
99 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |||||||| || | |
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| T |
13164041 |
gatcatgacgtctggtgtgggtgtggcaactcattttcattatct----tttaataggtttttgtataaagaaatttgaggatttagggggtgtttcatg |
13164136 |
T |
|
| Q |
100 |
agagattagaataagaggggaaacctgattttctactactttgatcattaatgcaaa |
156 |
Q |
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| T |
13164137 |
agagattagagtaagaggggaaacttgatttcctactactgggatcattaatacaaa |
13164193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 158 - 369
Target Start/End: Original strand, 11037200 - 11037394
Alignment:
| Q |
158 |
aaagggaaggaagaatgagtgagaataatttggacctaatatgaaccaaatagaatatcgtatgacataaaggcaattcatttgctacactattgcttgt |
257 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| || ||||||||| |
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| T |
11037200 |
aaagggaaggaagaatgaatgagaataatttggacccaatatgaaccaaatggaatatcatatgacataaaggca-------tg------aattgcttgt |
11037286 |
T |
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| Q |
258 |
acgtggaactaagaggaaaaaggtgcgggctgacttttaaaatgtgtacatggaatggaattgttactattaatttcttctttattttgaaagtgaataa |
357 |
Q |
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| T |
11037287 |
acatgaaactaagagg-aaaatgtgagggctgatttttggattgtgtacatggaatggaattattactatta---ttttctttattttgaaagtgaatat |
11037382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 158 - 369
Target Start/End: Original strand, 13164222 - 13164416
Alignment:
| Q |
158 |
aaagggaaggaagaatgagtgagaataatttggacctaatatgaaccaaatagaatatcgtatgacataaaggcaattcatttgctacactattgcttgt |
257 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| || ||||||||| |
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| T |
13164222 |
aaagggaaggaagaatgaatgagaataatttggacccaatatgaaccaaatggaatattatatgacataaaggca-------tg------aattgcttgt |
13164308 |
T |
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| Q |
258 |
acgtggaactaagaggaaaaaggtgcgggctgacttttaaaatgtgtacatggaatggaattgttactattaatttcttctttattttgaaagtgaataa |
357 |
Q |
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||||| ||||| |||| |||| ||| ||||||| |||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||| |
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| T |
13164309 |
acgtgaaactatgagg-aaaatgtgagggctgatttttggattgtgtacatggaatggaattattactatta---ttttctttattttgaaagtgaatat |
13164404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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