View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_22 (Length: 418)
Name: NF5916_high_22
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 25633026 - 25632638
Alignment:
| Q |
19 |
gattctgcgttcttcatacaccctagcgaaggtcctaattctctaattgtttctccaaagcttgatggttctaattaccttgcttggagtcgatctatga |
118 |
Q |
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| T |
25633026 |
gattctgcgttcttcgtacaccctagggaaggtcctaattctctaattgtttctccaaagcttgatggttctaattaccttgcttggaatcgatctatga |
25632927 |
T |
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| Q |
119 |
aacgcgcattgggaaggaagaacaaattagggttcatcaatgccactatattcctcaattgtgttaattgagtgaaagtgaaagtgaataattgtgttaa |
218 |
Q |
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| T |
25632926 |
aacgcgcattgggaacgaagaacaaattagggttcatcaatgccactatattcctcaattgtgttaattgagttaaagtgaaagtaaataattgtgttaa |
25632827 |
T |
|
| Q |
219 |
ctgttatattcaattgagatcgaaccaacaagtgaactgatatgaattgtattgagctcaatttaaattcaattttacaacccatcccaccaaagcaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25632826 |
ctgttatattcaattgagatcgaaccaacaagtgaactgatatgaattatattgagctcaatttaaattcaattttacaacccatcccaccaaagcaaaa |
25632727 |
T |
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| Q |
319 |
ggcttgtagtaagaacatgcaattgttgattcacattgaaaatgttggtgagtgaaagcacgtaataacctcccatgcatgaaacctatg |
408 |
Q |
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| T |
25632726 |
ggcttgtagtaagaacatgcaattgttgattcacattgaaaatgttggtgagtggaagcacgtaat-acctcccatgcatgaaacctatg |
25632638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 25644182 - 25644127
Alignment:
| Q |
227 |
ttcaattgagatcgaaccaacaagtgaactgatatgaattgtattgagctcaattt |
282 |
Q |
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| T |
25644182 |
ttcaaatgggattgaaccaacaagtgaactgataaggattgtatcgagctcaattt |
25644127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 18483685 - 18483632
Alignment:
| Q |
91 |
aattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaa |
144 |
Q |
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|||||| | ||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
18483685 |
aattacttagcttggagtcgttcgatgaaacgcgcattgggagcgaagaacaaa |
18483632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 25644121 - 25644073
Alignment:
| Q |
305 |
ccaccaaagcaaaaggcttgtagtaagaacatgcaattgttgattcaca |
353 |
Q |
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| T |
25644121 |
ccaccaaaacaaaacgtttatagtaagaacatgcaattgttgatgcaca |
25644073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 11922534 - 11922637
Alignment:
| Q |
57 |
ttctctaattgtttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatc |
156 |
Q |
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|||||||| |||||||||||||||| ||||||| |||||| |||| |||| || ||||||| ||| | | ||||||| |||||||||||||||||| ||| |
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| T |
11922534 |
ttctctaactgtttctccaaagcttaatggttccaattacattgcatggaatcaatctatgcaacacaccttgggaaagaagaacaaattagggtttatc |
11922633 |
T |
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| Q |
157 |
aatg |
160 |
Q |
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|||| |
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| T |
11922634 |
aatg |
11922637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 42134082 - 42134135
Alignment:
| Q |
91 |
aattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaa |
144 |
Q |
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|||||| | ||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
42134082 |
aattacttagcttggagtcgttcgatgaaacgcgcattgggagcgaagaacaaa |
42134135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 20071415 - 20071491
Alignment:
| Q |
84 |
tggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
160 |
Q |
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||||||||||||||| ||||||| |||||||||| ||| || ||||||| |||||||||| |||||||||||||| |
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| T |
20071415 |
tggttctaattacctcgcttggaatcgatctatgcaacatgccttgggaacaaagaacaaataagggttcatcaatg |
20071491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 28668877 - 28668754
Alignment:
| Q |
37 |
caccctagcgaaggtcctaattctctaattgtttctccaaagcttgatggttctaattaccttgcttggagtcgatctatgaaacgcgcattgggaagga |
136 |
Q |
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||||| |||||||||||||||| ||||| ||||||| |||||| ||||||| |||||| |||||||| ||||||||| ||| || ||||||| | |
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| T |
28668877 |
cacccaagcgaaggtcctaattttctaaccgtttctctgaagcttaatggttccaattacattgcttggtaccgatctatgcaacaagctttgggaacaa |
28668778 |
T |
|
| Q |
137 |
agaacaaattagggttcatcaatg |
160 |
Q |
| |
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|| ||||| |||| |||||||||| |
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| T |
28668777 |
aggacaaactaggtttcatcaatg |
28668754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 21521350 - 21521288
Alignment:
| Q |
98 |
ttgcttggagtcgatctatgaaacgcgcattgggaaggaagaacaaattagggttcatcaatg |
160 |
Q |
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||||||||| || | ||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
21521350 |
ttgcttggaatcaaactatgcaacgcgcattgggaacaacaaacaaattagggttcatcaatg |
21521288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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