View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_high_32 (Length: 318)
Name: NF5916_high_32
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_32 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 34977161 - 34977454
Alignment:
| Q |
18 |
agtggattcctcaacttacaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgtt |
117 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977161 |
agtggattcctcaacttacaaatcatgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgtt |
34977260 |
T |
|
| Q |
118 |
gtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
34977261 |
gtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatcttaaggaactgtacattggagaatgtccc |
34977360 |
T |
|
| Q |
218 |
aacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctcgagacggttccatctg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
34977361 |
aacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattcgaaatccccaacctcgagacggttccttctg |
34977454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 34991040 - 34991322
Alignment:
| Q |
18 |
agtggattcctcaacttacaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgtt |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34991040 |
agtggattcctcaacttaaaaatcttgttaagtttgatttagcatattccttattaactgatgatccaattaagtatctagaaaacatgccaaacttgtt |
34991139 |
T |
|
| Q |
118 |
gtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtccc |
217 |
Q |
| |
|
|||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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|
| T |
34991140 |
gtccctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtccc |
34991239 |
T |
|
| Q |
218 |
aacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctcgagac |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| || |||||||||||| |||| |
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| T |
34991240 |
aacatgaattcaattgttattgataaaggagcattacattctctaaaaaagtttgagttattcgagatccccaacctcaagac |
34991322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 34984373 - 34984643
Alignment:
| Q |
24 |
ttcctcaacttacaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccct |
123 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| |
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|
| T |
34984373 |
ttcctcaacttaaaaatcttgttaagtttgatttagcaaattccttcttaactgatgatccaatt--gtatttataaaacatgccaaacttgttgtccct |
34984470 |
T |
|
| Q |
124 |
ctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatg |
223 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| |
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|
| T |
34984471 |
ctcaatcatctccaatgcttatgaaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagacttgcgcaacatg |
34984570 |
T |
|
| Q |
224 |
aattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctcg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| |||||||||| |
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|
| T |
34984571 |
aattcaattgttatcgataaaggagcattgcattctctaaaaaagtttgagttattcggaatgcccaacctcg |
34984643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 295
Target Start/End: Complemental strand, 2304163 - 2303888
Alignment:
| Q |
22 |
gattcctcaacttacaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtcc |
121 |
Q |
| |
|
|||| |||||||| ||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2304163 |
gatttctcaacttcaaaatcttgttaagtttgatttagcagattccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtcc |
2304064 |
T |
|
| Q |
122 |
ctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgta--cattggagaatgtcccaa |
219 |
Q |
| |
|
||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| || ||||||| | | |||| |
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|
| T |
2304063 |
ctctcaatcatctataatgcttatgaaggcaaaagtttacattttcatgatggaggttttcaaaatctaaaagaactatatacattggacacttgtccaa |
2303964 |
T |
|
| Q |
220 |
catgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctc |
295 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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|
| T |
2303963 |
cttgaattcaattgttatcgataaaggagcattgcattctctaaaaaagttcgagttattcaaaatccccaacctc |
2303888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 34984208 - 34984242
Alignment:
| Q |
18 |
agtggattcctcaacttacaaatcttgttaagttg |
52 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
34984208 |
agtggattcctcaacttaaaaatcttgttaagttg |
34984242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 40581718 - 40582011
Alignment:
| Q |
18 |
agtggattcctcaacttacaaatcttgttaagttggaattagcacgttccttcttaactgatgatccaattaagtatctagaaaacatgccaaacttgtt |
117 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
40581718 |
agtgggttcctcaacttaaaaatcttgttaagtttgatttagcaaattccttcttaaatgatgatccaattaagtatctagaaaacatgctaaacatgtt |
40581817 |
T |
|
| Q |
118 |
gtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagaatgtccc |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| | | | |
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|
| T |
40581818 |
gtccctctcaatcatctacaatgcttatgaaggcgaaagcttacattttcatgacggaggttgtcaaaatctaaaggaactgtacattggaggcttgctc |
40581917 |
T |
|
| Q |
218 |
aacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattagaaatccccaacctcgagacggttccatctg |
311 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||| |||||||||| |||| |
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|
| T |
40581918 |
aacgtgaattcaattgttatcgataaaggagcattgcattctctaaaattgtttgagttattccatatccccaacctcaagacggttccttctg |
40582011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 71 - 307
Target Start/End: Complemental strand, 22619507 - 22619271
Alignment:
| Q |
71 |
ttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatg |
170 |
Q |
| |
|
|||| ||| |||||||| |||| || ||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| | |
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|
| T |
22619507 |
ttaattgaagatccaataaagtcgcttgaaaatctgcaaaacttgttgtccctctcaatcatcaacaatgcttatgaaggtgaaagtttacattttcacg |
22619408 |
T |
|
| Q |
171 |
atggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagct |
270 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| |||||| || ||| || |||||||| | ||||| |||||||| | ||||||||||||||| | |
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|
| T |
22619407 |
atggagggttgcaaaatctaaaggaactatatattagagaatcgcctaacttgcattcaattttcatcgacaaaggagcgctacattctctaaaaaagtt |
22619308 |
T |
|
| Q |
271 |
tgagttat-tagaaatccccaacctcgagacggttcca |
307 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
22619307 |
cgagttatctag-catccccaacctcaagacggttcca |
22619271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 71 - 306
Target Start/End: Complemental strand, 22646801 - 22646566
Alignment:
| Q |
71 |
ttaactgatgatccaattaagtatctagaaaacatgccaaacttgttgtccctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatg |
170 |
Q |
| |
|
||||||||| ||||||| | || |||| || ||| ||||||| ||||| ||||||||||| ||| |||||| ||| |||| |||||||||||||| |
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|
| T |
22646801 |
ttaactgataatccaatagaacatttagataaaatgtcaaacttattgtctctctcaatcattaacaaagcttataaaggtgaaattttacattttcatg |
22646702 |
T |
|
| Q |
171 |
atggaggttgtcaaaatctaaaggaactgtacattggagaatgtcccaacatgaattcaattgttatcgataaaggagcattgcattctctaaaaaagct |
270 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||| ||| | || || ||||||| || || || ||| |||||||||| | ||||||||||||| | |
|
|
| T |
22646701 |
atggagggtttcaaaatctaaaggaactatacattacagacttgcctgacttgaattcgatcgtcattgatgaaggagcattaccttctctaaaaaagtt |
22646602 |
T |
|
| Q |
271 |
tgagttattagaaatccccaacctcgagacggttcc |
306 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |
|
|
| T |
22646601 |
ccagttatctcgtatccccaaccttgagacggttcc |
22646566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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