View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_high_36 (Length: 268)
Name: NF5916_high_36
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 10634183 - 10633942
Alignment:
| Q |
19 |
tcatgtccttatggccttcannnnnnnngtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatg |
118 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10634183 |
tcatgtccttatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatg |
10634084 |
T |
|
| Q |
119 |
tttgtctctatggctagttttttgctatattgtttggccttttggattaagattaggtttgccacaagggttgttgaggggaaaattgataccctccttc |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| || |||||| |||| |||||||||||||| ||||||| |
|
|
| T |
10634083 |
tttgtctctatggctagttttttactatattgcttggccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttc |
10633984 |
T |
|
| Q |
219 |
aaatgtctggttcgctctcaataatttctttggtgatgatgt |
260 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10633983 |
aaatgtttggttcgctctcaataatttctttggtgatgatgt |
10633942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 10698440 - 10698296
Alignment:
| Q |
47 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
146 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||||||||||||| | ||| || |||||||||||| || ||| || ||||| ||||||||| | |||| |
|
|
| T |
10698440 |
gtactccttggtttcctccaaattagatacccagaaaatcctaccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctat |
10698341 |
T |
|
| Q |
147 |
attgtttggccttttggattaagattaggtttgccacaagggttg |
191 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| | |||||||||| |
|
|
| T |
10698340 |
attgtttggccttttggattaagcttaagtttacaacaagggttg |
10698296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 10690507 - 10690363
Alignment:
| Q |
47 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
146 |
Q |
| |
|
|||||| |||||||||||||| || |||||||||||||||||||| | ||| |||||||||||||||||| ||| || ||||| ||||| ||| | |||| |
|
|
| T |
10690507 |
gtactccttggtttcctccaagttagatatccagaaaatcctaccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactat |
10690408 |
T |
|
| Q |
147 |
attgtttggccttttggattaagattaggtttgccacaagggttg |
191 |
Q |
| |
|
|||| |||||||| ||||||| ||| |||||| |||||||||| |
|
|
| T |
10690407 |
attgcttggccttcatgattaagcttaagtttgctacaagggttg |
10690363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 191
Target Start/End: Complemental strand, 10707649 - 10707505
Alignment:
| Q |
47 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
146 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||| ||||| || | ||| || |||||||||| |||||| | ||||| | ||||| ||| | |||| |
|
|
| T |
10707649 |
gtactccttgctttcctccaaattacttatccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttctactat |
10707550 |
T |
|
| Q |
147 |
attgtttggccttttggattaagattaggtttgccacaagggttg |
191 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||| |||||||||| |
|
|
| T |
10707549 |
attgttttgccttttggattaagcttatgtttgcaacaagggttg |
10707505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 180
Target Start/End: Complemental strand, 10657727 - 10657597
Alignment:
| Q |
50 |
ctcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctatatt |
149 |
Q |
| |
|
|||||||||||||| |||||| | |||||| | ||||| || | ||| ||| |||||||||||||||| | ||||| | ||||| ||| | ||||||| |
|
|
| T |
10657727 |
ctcattggtttccttcaaattagttatccaaataatcccactgcatttcaagcccatccaaagacaatgctactctctgtagctagctttctactatatt |
10657628 |
T |
|
| Q |
150 |
gtttggccttttggattaagattaggtttgc |
180 |
Q |
| |
|
| || ||||||||||||||| ||| |||||| |
|
|
| T |
10657627 |
gctttgccttttggattaagcttaagtttgc |
10657597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 33777305 - 33777443
Alignment:
| Q |
47 |
gtactcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctagttttttgctat |
146 |
Q |
| |
|
||||||||||||||||| |||||| | |||||||| ||||| || | ||| | ||||||||||||||||||||||||||||| ||||| ||| | |||| |
|
|
| T |
33777305 |
gtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactat |
33777404 |
T |
|
| Q |
147 |
attgtttggccttttggattaagattaggtttgccacaa |
185 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
33777405 |
attgtttggtcttttggattaagattaagtttaccacaa |
33777443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 33774667 - 33774802
Alignment:
| Q |
49 |
actcattggtttcctccaaattcgatatccagaaaatcctacctcgtttgaagtccatccaaagacaatgtttgtctctatggctag-ttttttgctata |
147 |
Q |
| |
|
||||||||||||||| |||||| | |||||||| ||||| || | ||| | |||||||||||||||||||||||| |||| ||||| |||| | ||||| |
|
|
| T |
33774667 |
actcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactata |
33774766 |
T |
|
| Q |
148 |
ttgtttggccttttggattaagattaggtttgccac |
183 |
Q |
| |
|
||| |||| ||| |||||||| |||| |||| |||| |
|
|
| T |
33774767 |
ttgcttggtcttctggattaatattaagtttaccac |
33774802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 15246718 - 15246769
Alignment:
| Q |
105 |
atccaaagacaatgtttgtctctatggctagttttttgctatattgtttggc |
156 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| ||| | |||||||||||||| |
|
|
| T |
15246718 |
atccaaagacaatgttagtctctattgctagctttctactatattgtttggc |
15246769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Original strand, 15240381 - 15240447
Alignment:
| Q |
102 |
tccatccaaagacaatgtttgtctctatggctagttttttgctatattgtttggccttttggattaa |
168 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||| | ||||||| ||| || |||||| |||| |
|
|
| T |
15240381 |
tccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaa |
15240447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University