View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916_high_47 (Length: 249)

Name: NF5916_high_47
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916_high_47
NF5916_high_47
[»] chr2 (1 HSPs)
chr2 (3-125)||(15147742-15147862)
[»] chr1 (1 HSPs)
chr1 (67-125)||(1074930-1074988)
[»] chr3 (2 HSPs)
chr3 (72-120)||(26127159-26127207)
chr3 (72-120)||(26177209-26177257)
[»] scaffold0050 (1 HSPs)
scaffold0050 (71-122)||(81016-81067)
[»] chr6 (1 HSPs)
chr6 (72-122)||(4370896-4370946)


Alignment Details
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 15147862 - 15147742
Alignment:
Q  3 ataatgggtcaaaatagcatatttccctaaaaatgggtgttcatttttgccnnnnnnnnaataagggatcaaaaccgctactttttcaaacttaaagggt 102  Q
    ||||||| |||||| |||||||||||||||| ||||| || || |||||||        |||||| |||||||||||||||||||||||||||| |||||    
T  15147862 ataatggatcaaaagagcatatttccctaaacatgggggt-cacttttgccttttttt-aataagcgatcaaaaccgctactttttcaaacttagagggt 15147765  T
Q  103 gaatagtgcgattaagcctattt 125  Q
    ||||| |||||||||||||||||    
T  15147764 gaataatgcgattaagcctattt 15147742  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 1074988 - 1074930
Alignment:
Q  67 gggatcaaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcctattt 125  Q
    |||||||||| | |||||||| |||||||| ||||||||||||||  ||||||||||||    
T  1074988 gggatcaaaatcactacttttgcaaacttagagggtgaatagtgctcttaagcctattt 1074930  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 26127159 - 26127207
Alignment:
Q  72 caaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcc 120  Q
    ||||| |||||||||| |||||||| ||||||||||||||| |||||||    
T  26127159 caaaatcgctacttttgcaaacttagagggtgaatagtgcgtttaagcc 26127207  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 26177209 - 26177257
Alignment:
Q  72 caaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagcc 120  Q
    ||||| |||||||||| |||||||| ||||||||||||||  |||||||    
T  26177209 caaaatcgctacttttgcaaacttagagggtgaatagtgcatttaagcc 26177257  T

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Target: scaffold0050 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 81016 - 81067
Alignment:
Q  71 tcaaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagccta 122  Q
    |||||| |||||||||| ||||||||  |||||||||||||| |||||||||    
T  81016 tcaaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagccta 81067  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 4370946 - 4370896
Alignment:
Q  72 caaaaccgctactttttcaaacttaaagggtgaatagtgcgattaagccta 122  Q
    ||||| |||||||||| ||||||||  |||||||||||||| |||||||||    
T  4370946 caaaatcgctacttttgcaaacttagggggtgaatagtgcgtttaagccta 4370896  T

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