View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_49 (Length: 242)
Name: NF5916_high_49
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_49 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 18804582 - 18804832
Alignment:
| Q |
1 |
attttttaatgaaatagttccttgttttagtatccttaagaaagtaccccaaagacgctcgttaccaagacctct---------------cacgacataa |
85 |
Q |
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| T |
18804582 |
attttttaatgaaatagttccttgttttagtatccttaagaaagtaccccaaagacgcttgttaccaagacctctatcaaaatcgtggatcacgacataa |
18804681 |
T |
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| Q |
86 |
ttgcggcagtaatttaaaatcttctttatctgttttcaggtttttacaaccactgacaacaggagagtatccagcaagcatggtgtctaatttggaaaca |
185 |
Q |
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| T |
18804682 |
ttgcggcagtaatttaaaatcttctttatctgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtgtctaatttggaaaca |
18804781 |
T |
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| Q |
186 |
ttaccaaagttcactaaagagcaatatgagagtcttattgggtcatacgat |
236 |
Q |
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| T |
18804782 |
ttaccaaagttcactaaagagcaatatgagagtcttattgggtcatacgat |
18804832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 4599808 - 4599651
Alignment:
| Q |
75 |
tcacgacataattgcggcagtaatttaaaatcttctttatctgttttcaggtttttacaaccactgacaacaggagagtatccagcaagcatggtgtcta |
174 |
Q |
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| T |
4599808 |
tcacgacaaaattgtgacggtaatttaaaatcttctttatctgtttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctt |
4599709 |
T |
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| Q |
175 |
atttggaaacattaccaaagttcactaaagagcaatatgagagtcttattgggtcata |
232 |
Q |
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| T |
4599708 |
tcgtgaaagatttaccaaagttcactgaagagcaatctaaaagtcttattgggtcata |
4599651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 232
Target Start/End: Complemental strand, 4624119 - 4623979
Alignment:
| Q |
95 |
taatttaaaatcttctttatctgttttcaggtttttacaaccactgacaacaggagagtatccagcaagcatggtgtctaatttg---gaaacattacca |
191 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||| || || || | ||||| |
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| T |
4624119 |
taatttaaaatcttctttatctgtttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctacca |
4624020 |
T |
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| Q |
192 |
aagttcactaaagagcaatatgagagtcttattgggtcata |
232 |
Q |
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| T |
4624019 |
aagttcactgcagagcaatctaagagtcttattgggtcata |
4623979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 25038272 - 25038173
Alignment:
| Q |
135 |
ccactgacaacaggagagtatccagcaagcatggtgtctaatttggaaa---cattaccaaagttcactaaagagcaatatgagagtcttattgggtcat |
231 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||| || |||||||||||||| | |||||||| | ||| ||||||||| |||| |
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| T |
25038272 |
ccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatctaagattcttattggctcat |
25038173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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