View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_high_5 (Length: 594)
Name: NF5916_high_5
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 285 - 575
Target Start/End: Original strand, 11538507 - 11538796
Alignment:
| Q |
285 |
gctatgttatatgacattattgtatcagttcatttatttgatttttaactttgcatatgtaaaatgatggcttgatatttcattatattttttgaaggag |
384 |
Q |
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| T |
11538507 |
gctatgttatatgacattattgtatcagttcatttatttgatttttaactttgcatatgtaaaatgattgcttgatatttcattatattttttgaaggag |
11538606 |
T |
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| Q |
385 |
gcttgttatttcaatatgattggttatgtatgtataattttataatataaatcttcaatttgttcttcaattcataatggttatattacccactttccat |
484 |
Q |
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| T |
11538607 |
gcttgatatttcaatatgattggttatgtatgtataattttataatatgaatcttcaatttgttcttcaattcataatggttatattacccactttccat |
11538706 |
T |
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| Q |
485 |
ttcaaacggatttgcttacttaatttgcaatcagatcatagaatttaacatgaaatggaagtgaaaatttttaaattataatcaacagact |
575 |
Q |
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| T |
11538707 |
ttcaaacggatttgcttacttaa-tagcaatcagatcatagaatttaacatgaaatggaagtgcaaaattttaaattataatcagcagact |
11538796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 11538223 - 11538461
Alignment:
| Q |
1 |
attgagtgtgattcctgtgaggagaggttactgggggaataagattgggaagccacatactgtgccgtgtaaagttaccggaaagtgtggttctgttact |
100 |
Q |
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| T |
11538223 |
attgagtgtgattcctgtgaggagaggttactgggggaataagattgggaagccacatactgtgccgtgtaaggttactggaaagtgtggttctgttact |
11538322 |
T |
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| Q |
101 |
gttcgtatggttccagctccgagaggttctggtattgttgctgctagggttcctaagaaggttttgcagtttgctgggattgatgatgtttttacttctt |
200 |
Q |
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| T |
11538323 |
gtgaggatggttcctgctcctcgtggttctggtattgttgctgctagggttcctaagaaggttttgcagtttgctgggattgatgatgtttttacttctt |
11538422 |
T |
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| Q |
201 |
caaggggatccaccaaaacccttggcaatttcgttaagg |
239 |
Q |
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| T |
11538423 |
caaggggatccaccaaaacccttggcaatttcgttaagg |
11538461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 44447308 - 44447544
Alignment:
| Q |
3 |
tgagtgtgattcctgtgaggagaggttactgggggaataagattgggaagccacatactgtgccgtgtaaagttaccggaaagtgtggttctgttactgt |
102 |
Q |
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| T |
44447308 |
tgagtgttattccagtgagaagaggttattggggtaacaagatcggaaagccacacactgttccttgtaaggttactggaaagtgtggttctgttactgt |
44447407 |
T |
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| Q |
103 |
tcgtatggttccagctccgagaggttctggtattgttgctgctagggttcctaagaaggttttgcagtttgctgggattgatgatgtttttacttcttca |
202 |
Q |
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| T |
44447408 |
tcgtatggttcctgctcctcgtggttctggtattgttgctgctagagttcctaagaaggttttgcagtttgctggtattgatgatgttttcacttcctct |
44447507 |
T |
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| Q |
203 |
aggggatccaccaaaacccttggcaatttcgttaagg |
239 |
Q |
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| T |
44447508 |
aggggatccaccaaaacccttggaaatttcgtcaagg |
44447544 |
T |
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