View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_11 (Length: 536)
Name: NF5916_low_11
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 2756698 - 2756976
Alignment:
| Q |
1 |
ccaaacatatccaaattttcaaaatcaatgtatcataattataacaataacaaagaaaacaaggaaaaaccttctttgattttttgtaaggcttcaaaga |
100 |
Q |
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| T |
2756698 |
ccaaacatatccaaattttcaaaatcattatatcataattataacagtaacaaagaaaacaaggaaaaaccttctttgattttttgtaaggcttcaaaga |
2756797 |
T |
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| Q |
101 |
gtggtttctgatttttcttcttaagaaccttgccaagataatgaagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaagagcaac |
200 |
Q |
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| T |
2756798 |
gtggtttctgatttttcttcttaagaaccttgccaagataatgaagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaagagcaac |
2756897 |
T |
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| Q |
201 |
aacccatgtaggtgtaaattgcaaatctcttccttcttcagcttctcctccaccatgacccatgttgcagttgtgttac |
279 |
Q |
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| T |
2756898 |
aacccatgtaggtgtaaattgcaaatctcttccttcttcagcttctcctccaccatgacccatgttgcagttgtgttac |
2756976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 316 - 518
Target Start/End: Original strand, 2756974 - 2757176
Alignment:
| Q |
316 |
tactctttgttgtgttttatgttacaactgtgacatgggacataaaaaacaacaactactgcactatttcttgttctaatgtcgtattgttcgtccaatt |
415 |
Q |
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| T |
2756974 |
tactctttgttgtgttttatgttacaactgcaacatgggacataaaaaacaacaactactgcactatttcttgttctaatgttgtattgttcgtccaatt |
2757073 |
T |
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| Q |
416 |
aatctaactttatataatacaaatgattggtccattttgtagtcaaaaaagnnnnnnngaggaaaaaatttcttgatatagtacttacttacattaattg |
515 |
Q |
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| T |
2757074 |
aatctaactttatataatacaagtgattggtccattttgtagtcaaaaaagtttttttgaggaaaaaatttcttgatatagtacttacttacattaattg |
2757173 |
T |
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| Q |
516 |
ata |
518 |
Q |
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| T |
2757174 |
ata |
2757176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 68 - 311
Target Start/End: Original strand, 2748700 - 2748944
Alignment:
| Q |
68 |
aaccttctttgattttttgtaaggcttcaaagagtggtttctgatttttcttcttaagaaccttgccaagataatgaagagaacgttccaccgcgaatga |
167 |
Q |
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|||||||||| ||||| |||| ||||| | | |||||||| || |||||||||||||||| ||||||||| |||||||||||| ||| | |||||||| |
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| T |
2748700 |
aaccttctttaattttctgtagggcttgataaagtggtttttggtttttcttcttaagaaagttgccaagacaatgaagagaacattcagcggcgaatga |
2748799 |
T |
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| Q |
168 |
aacagcgac-gatgacagtgcaaacaagagcaacaacccatgtaggtgtaaattgcaaatctcttccttcttcagcttctcctccaccatgacccatgtt |
266 |
Q |
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| T |
2748800 |
aactgcgaccgatgacgctgcaaacaagggcaacaatccatgtaggagcatattgcaaatcgggtccttcttcaacttgtcctccaccatgacccatgtt |
2748899 |
T |
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| Q |
267 |
gcagttgtgttacacaatgtttgatttgaacaacgttaacttact |
311 |
Q |
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| T |
2748900 |
gtaactgtgttaaacagtgtttgatttgaacaatattaacttact |
2748944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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