View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_12 (Length: 500)
Name: NF5916_low_12
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 74 - 401
Target Start/End: Complemental strand, 2938505 - 2938178
Alignment:
| Q |
74 |
acaaaattgtaaatgataccaaactatatgctgnnnnnnncatcgaaactacaaacttataaagcaaacccaacatggaagaaaatgttacctgagtatt |
173 |
Q |
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| T |
2938505 |
acaaaattgtaaatgataccaaactatatgctgtttttttcatcgaaactacaaacttataaagcaaacccaacatggaagaaaatgttacctgagtatt |
2938406 |
T |
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| Q |
174 |
ctcgatgatatgaccatcttcatctcgtagtctgcaacacgagtaccagaaacacaattaccagaaactaaactattttctcagactctagttgataaga |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2938405 |
ctcgatgatatgaccatcttcatctcgtagtctgcaacacgagtaccagaaacacaattaccagaaactaaactattttctcagactctagttgataaga |
2938306 |
T |
|
| Q |
274 |
aaactgtaacaaaacacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgtgtctgaacataaaactcttcaggct |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2938305 |
aaactgtaacaaaacacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgcgtctgaacataaaactcttcaggct |
2938206 |
T |
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| Q |
374 |
tataaggaacatcctacaaagaagccac |
401 |
Q |
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| T |
2938205 |
tataaggaacatcctacaaagaagccac |
2938178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 486
Target Start/End: Complemental strand, 2938137 - 2938093
Alignment:
| Q |
442 |
tccacttgcatccatttgcttttatatagaatcatccaaaaccat |
486 |
Q |
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| T |
2938137 |
tccacttgcatccatttgcttttatatagaatcatccaaaaccat |
2938093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 2939056 - 2939017
Alignment:
| Q |
11 |
cagagatattttaaacaatagtcagaagcggaaggtgaaa |
50 |
Q |
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| T |
2939056 |
cagagagattttaaacaatagtcagaagcggaaggtgaaa |
2939017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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