View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916_low_13 (Length: 499)

Name: NF5916_low_13
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916_low_13
NF5916_low_13
[»] chr5 (8 HSPs)
chr5 (1-481)||(25095965-25096425)
chr5 (1-481)||(25153935-25154395)
chr5 (4-217)||(25098745-25098955)
chr5 (4-217)||(25157835-25158045)
chr5 (347-479)||(25095070-25095202)
chr5 (347-479)||(25153040-25153172)
chr5 (38-217)||(31250794-31250970)
chr5 (70-99)||(32200143-32200172)
[»] chr1 (2 HSPs)
chr1 (27-217)||(26857730-26857917)
chr1 (36-99)||(3330527-3330590)
[»] chr8 (1 HSPs)
chr8 (31-217)||(18001937-18002120)
[»] chr6 (1 HSPs)
chr6 (39-217)||(10383237-10383411)
[»] chr4 (4 HSPs)
chr4 (31-217)||(7635687-7635870)
chr4 (31-99)||(50371648-50371716)
chr4 (41-217)||(5883078-5883252)
chr4 (31-99)||(19719208-19719276)
[»] chr3 (5 HSPs)
chr3 (32-217)||(30375877-30376059)
chr3 (50-99)||(30406136-30406185)
chr3 (19-99)||(44121369-44121450)
chr3 (169-217)||(25131802-25131850)
chr3 (55-96)||(4555754-4555795)
[»] chr7 (3 HSPs)
chr7 (33-99)||(33879817-33879883)
chr7 (31-99)||(8914678-8914746)
chr7 (46-94)||(9083628-9083676)
[»] scaffold0008 (2 HSPs)
scaffold0008 (49-90)||(42171-42212)
scaffold0008 (169-217)||(42047-42095)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 25095965 - 25096425
Alignment:
Q  1 aattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25095965 aattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaat 25096064  T
Q  101 taattacagattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcatt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25096065 taattacggattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcatt 25096164  T
Q  201 cctttccttccaaataaggaccattgtaccaactcagacttgactccatgataaaggtaactgtcctcaaaacttttcttacaccaaaatctctttgcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||    
T  25096165 cctttccttccaaataaggaccattgtaccaactcagacttgactccatgataaaggtaactgtcctcaaaa--------------------ctttgcag 25096244  T
Q  301 tgctgcaacgtttgaataaggaccggcattggatcatttggcgagctattgaagctaaaacgcgagttgtatagttcatgagcaagcaatagcattactt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25096245 tgctgcaacgtttgaataaggaccggcattggatcatttggcgagctattgaagctgaaacgcgagttgtatagtttatgagcaagcaatagcattactt 25096344  T
Q  401 ttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatagatgttgctttcttgatgattcacaataaggctggt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25096345 ttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatagatgctgctttcttgatgattcacaataaggctggt 25096425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 25153935 - 25154395
Alignment:
Q  1 aattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25153935 aattatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaat 25154034  T
Q  101 taattacagattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcatt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25154035 taattacggattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcatt 25154134  T
Q  201 cctttccttccaaataaggaccattgtaccaactcagacttgactccatgataaaggtaactgtcctcaaaacttttcttacaccaaaatctctttgcag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||    
T  25154135 cctttccttccaaataaggaccattgtaccaactcagacttgactccatgataaaggtaactgtcctcaaaa--------------------ctttgcag 25154214  T
Q  301 tgctgcaacgtttgaataaggaccggcattggatcatttggcgagctattgaagctaaaacgcgagttgtatagttcatgagcaagcaatagcattactt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25154215 tgctgcaacgtttgaataaggaccggcattggatcatttggcgagctattgaagctgaaacgcgagttgtatagtttatgagcaagcaatagcattactt 25154314  T
Q  401 ttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatagatgttgctttcttgatgattcacaataaggctggt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25154315 ttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatagatgctgctttcttgatgattcacaataaggctggt 25154395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 25098745 - 25098955
Alignment:
Q  4 tatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaa 103  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   |    
T  25098745 tatttacattagtagttcaacagaaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcataaaacttataataaaaa---a 25098841  T
Q  104 ttacagattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||| |||||||||||||||||||    
T  25098842 ttacagattttgctttataacacggaaaagtaagtagcctgatgtactccaaaagctgtgaagatgagttttctttggtttggaaaagtctatcattcct 25098941  T
Q  204 ttccttccaaataa 217  Q
    ||||||| ||||||    
T  25098942 ttccttcaaaataa 25098955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 25157835 - 25158045
Alignment:
Q  4 tatttacatcagtagttcaacataaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaa 103  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   |    
T  25157835 tatttacattagtagttcaacagaaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcataaaacttataataaaaa---a 25157931  T
Q  104 ttacagattttgctttataacacggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||| |||||||||||||||||||    
T  25157932 ttacagattttgctttataacacggaaaagtaagtagcctgatgtactccaaaagctgtgaagatgagttttctttggtttggaaaagtctatcattcct 25158031  T
Q  204 ttccttccaaataa 217  Q
    ||||||| ||||||    
T  25158032 ttccttcaaaataa 25158045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 347 - 479
Target Start/End: Original strand, 25095070 - 25095202
Alignment:
Q  347 tattgaagctaaaacgcgagttgtatagttcatgagcaagcaatagcattacttttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatag 446  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  25095070 tattgaagctgaaacgcgagttgtatagtttatgagcaagcagtagcattacttttgaacttgtctaattctcaatcaatacaacgtgaaagtaacaaag 25095169  T
Q  447 atgttgctttcttgatgattcacaataaggctg 479  Q
    |||||||||||||||||||||| ||||||||||    
T  25095170 atgttgctttcttgatgattcataataaggctg 25095202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 347 - 479
Target Start/End: Original strand, 25153040 - 25153172
Alignment:
Q  347 tattgaagctaaaacgcgagttgtatagttcatgagcaagcaatagcattacttttgaacttgtctaatgctcaatcaatacaacgtgaaagtaacatag 446  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  25153040 tattgaagctgaaacgcgagttgtatagtttatgagcaagcagtagcattacttttgaacttgtctaattctcaatcaatacaacgtgaaagtaacaaag 25153139  T
Q  447 atgttgctttcttgatgattcacaataaggctg 479  Q
    |||||||||||||||||||||| ||||||||||    
T  25153140 atgttgctttcttgatgattcataataaggctg 25153172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 217
Target Start/End: Complemental strand, 31250970 - 31250794
Alignment:
Q  38 attagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaaaagtaag 137  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||| |||   || |   |||| ||||||||||||  |||| ||||| |||    
T  31250970 attagcccatacccaaacataagaaagggttatggcaccaatcatgatacttaaaataggaagt---tacaaattttgctttatgccacgaaaaagaaag 31250874  T
Q  138 tagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
     ||||| |||| |||| |||||||   |   |||||||||||||||||||||||||| || |||||||||||||| ||||    
T  31250873 aagcctaatgttctccaaaagctgaacaaaggagttttctttggttcggaaaagtctttcgttcctttccttccatataa 31250794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 32200172 - 32200143
Alignment:
Q  70 tggcaccaatcatgaaacttataatgaaaa 99  Q
    ||||||||||||||||||||||||||||||    
T  32200172 tggcaccaatcatgaaacttataatgaaaa 32200143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 26857730 - 26857917
Alignment:
Q  27 aaataacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacac 126  Q
    |||||||||||||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||||||   |||||| ||||||||||||  |||    
T  26857730 aaataacaatgattagcccatacccaaacttaaaaacgggttctagcaccaatcataaaacttataatgaaaa---attacaaattttgctttatgccac 26857826  T
Q  127 ggaaaagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    ||| ||| |||||| |||||||||||| |||| |||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  26857827 ggataagaaagtagactgatgtactccaaaagttgcgaaggtgagttttctttggttcgaaaaagtttatcgttcctttccttccaaataa 26857917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 3330527 - 3330590
Alignment:
Q  36 tgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    ||||||||||||||||||||| || || | ||| ||||||||||||||||||||||||| ||||    
T  3330527 tgattagcctatacccaaacacaaaaacgagttttggcaccaatcatgaaacttataattaaaa 3330590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 18002120 - 18001937
Alignment:
Q  31 aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaa 130  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||||    || ||||||||||||  || | ||    
T  18002120 aacaatgattagcctatacccaaatataagaacaggttctggcaccaatcatgaaacttataataaaaatta---gcaaattttgctttatgccaagaaa 18002024  T
Q  131 aagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    ||| ||| ||||||| || |||| ||| |||  ||  |||| |||||||||||| |||||||||||| ||| |||||||||||||||    
T  18002023 aagaaaggagcctgaggttctccaaaatctgacgacatgagctttctttggttcagaaaagtctatcgttcatttccttccaaataa 18001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 10383411 - 10383237
Alignment:
Q  39 ttagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaaaagtaagt 138  Q
    ||||||||| ||||||||| ||||  |||| ||||||||||||||||||||||||||   || ||||||| |||| |||||||| |||| | ||| |||     
T  10383411 ttagcctattcccaaacatgagaacaggttttggcaccaatcatgaaacttataatg---ataaattacaaatttagctttataccacgaataagaaaga 10383315  T
Q  139 agcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    ||| |||||| ||||  ||||   | ||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  10383314 agcatgatgttctccagaagc-aagaaggtgtgttttctttggctcggaaaagtctagcattcctttcctttcaaataa 10383237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 7635870 - 7635687
Alignment:
Q  31 aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaa 130  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||| |||| ||    || ||||||||||||  ||   ||    
T  7635870 aacaatgattagcctatacccaaacacaagaacgagttctgacaccaatcatgaaacttataattaaaacta---gcacattttgctttatgccaataaa 7635774  T
Q  131 aagtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    |||  |||||||| |||| |||| ||||||| |||  |||| | | ||| |||| ||| ||||| ||||||||||||||||||||||    
T  7635773 aagagagtagcctaatgttctccaaaagctgaggaaatgagctctgttttgttctgaagagtctgtcattcctttccttccaaataa 7635687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 50371648 - 50371716
Alignment:
Q  31 aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    |||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||| ||||    
T  50371648 aacaatgattagcctatacccaaacacaagaacggattatggcaccaatcatgaaacttataattaaaa 50371716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 5883078 - 5883252
Alignment:
Q  41 agcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaaaagtaagtag 140  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |||| ||    || ||||||||||||  ||   |||||  |||||    
T  5883078 agcctatacccaaacacaagaacgggttctggcaccaatcatgtaacttataattaaaacta---gcaaattttgctttatgccaataaaaagagagtag 5883174  T
Q  141 cctgatgtactcctaaagctgcggaggtgagtttt-ctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    ||| |||| |||| ||||||| |||   |||||||  |||| ||  ||||| ||||||| || |||||||||||||||    
T  5883175 cctaatgttctccaaaagctggggaaaggagttttgttttgtttttgaaaattctatcaatcatttccttccaaataa 5883252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 19719276 - 19719208
Alignment:
Q  31 aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    |||||||||||| ||||||||||||| |||||  ||||| |||||||||||| ||||||||||| ||||    
T  19719276 aacaatgattagtctatacccaaacacaagaacaggttcgggcaccaatcataaaacttataattaaaa 19719208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 30375877 - 30376059
Alignment:
Q  32 acaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaattaattacagattttgctttataacacggaaa 131  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||||| |||| ||    || ||||||||||||  || | |||    
T  30375877 acaatgattagcctatatccaaacacaagaacgggttctggcaccaatcaaaaaacttataattaaaacta---gcaaattttgctttatgccatgaaaa 30375973  T
Q  132 agtaagtagcctgatgtactcctaaagctgcggaggtgagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    ||  |||||||| |||| |||| |||| || | |   ||| ||| ||||||| | |||| |||||||||| |||||||||||||||    
T  30375974 agagagtagcctaatgttctccaaaagttgagaaaaggagctttgtttggtttgaaaaattctatcattcatttccttccaaataa 30376059  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 30406136 - 30406185
Alignment:
Q  50 ccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    |||||||| | || ||||||||||||||||||||||||||||||||||||    
T  30406136 ccaaacatgaaaaagggttctggcaccaatcatgaaacttataatgaaaa 30406185  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 44121369 - 44121450
Alignment:
Q  19 ttcaacataaat-aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    ||||||| |||| |||||||||||| ||||||| |||||||||||  |||||| |||| |||||||||||||| ||| ||||    
T  44121369 ttcaacaaaaatgaacaatgattagactatacctaaacataagaacaggttctagcactaatcatgaaacttaaaattaaaa 44121450  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 25131802 - 25131850
Alignment:
Q  169 gagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    |||||||||||||||| ||||||||| || |||||||||||||||||||    
T  25131802 gagttttctttggttcagaaaagtctgtcgttcctttccttccaaataa 25131850  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 4555795 - 4555754
Alignment:
Q  55 cataagaaggggttctggcaccaatcatgaaacttataatga 96  Q
    |||||||| ||||| |||||||||||||||||| ||||||||    
T  4555795 cataagaaagggttatggcaccaatcatgaaacatataatga 4555754  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 33879817 - 33879883
Alignment:
Q  33 caatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    |||||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||| ||||    
T  33879817 caatgattagcctatacctaaacacaagaacggattctgccaccaatcatgaaacttataattaaaa 33879883  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 8914678 - 8914746
Alignment:
Q  31 aacaatgattagcctatacccaaacataagaaggggttctggcaccaatcatgaaacttataatgaaaa 99  Q
    ||||||||||| |||||||||||||| ||||| | |||||| |||||||||| ||||||||||| ||||    
T  8914678 aacaatgattaacctatacccaaacacaagaacgagttctgacaccaatcataaaacttataattaaaa 8914746  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 9083628 - 9083676
Alignment:
Q  46 atacccaaacataagaaggggttctggcaccaatcatgaaacttataat 94  Q
    |||||||||||  | |||||||| ||||||||||||||||| |||||||    
T  9083628 atacccaaacaacaaaaggggttatggcaccaatcatgaaaattataat 9083676  T

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Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 42212 - 42171
Alignment:
Q  49 cccaaacataagaaggggttctggcaccaatcatgaaactta 90  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  42212 cccaaacataagaaagggttctgacaccaatcatgaaactta 42171  T

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Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 42095 - 42047
Alignment:
Q  169 gagttttctttggttcggaaaagtctatcattcctttccttccaaataa 217  Q
    |||||||||||| |||||||||||||||  ||| |||| ||||||||||    
T  42095 gagttttctttgcttcggaaaagtctattgttcttttctttccaaataa 42047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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