View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_18 (Length: 451)
Name: NF5916_low_18
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 186 - 441
Target Start/End: Original strand, 8265341 - 8265597
Alignment:
| Q |
186 |
ccgatgtgatctctcttttgtttaggcacgtttcaattatttacgtctattgtcttataccaatcatccagataataataacaggtggaagaatatgatt |
285 |
Q |
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| T |
8265341 |
ccgatgtgatctctcttttgtttaggcacgtttcaattatttacgtctattgtcttataccaatcatccagataataataacaggtggaagaatatgata |
8265440 |
T |
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| Q |
286 |
gcttgaattattccttggaaaattttgattttaattctatcatttcaacaatttcactattttccttatgtagatgtgatttggcccaaggaaataccaa |
385 |
Q |
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| T |
8265441 |
acttgaattattccttggaaaaatttgattttaattctatcatttcaacaatttcattatcttccttatgtagatgtgatttgccccaaggaaataccaa |
8265540 |
T |
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| Q |
386 |
ccatccaattgttaaacaagacaccaaatcttacaataatt-aaactcccagtatta |
441 |
Q |
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| T |
8265541 |
ccatccaattgttaaacaagacaccaaatcttacaataattaaaactcccattatta |
8265597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 186 - 433
Target Start/End: Original strand, 8249983 - 8250230
Alignment:
| Q |
186 |
ccgatgtgatctctcttttgtttaggcacgtttcaattatttacgtctattgtcttataccaatcatccagataataataacaggtggaagaatatgatt |
285 |
Q |
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| T |
8249983 |
ccgatgtgatctctcttttgtttaggcacgtttcaattatttacctctattgtcttataccaatcatccagatattaataacaggtggaagaatatgatt |
8250082 |
T |
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| Q |
286 |
gcttgaattattccttggaaaattttgattttaattctatcatttcaacaatttcactattttccttatgtagatgtgatttggcccaaggaaataccaa |
385 |
Q |
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| T |
8250083 |
gcttgaattattccttggaaaattttgattttaattctatcatttcaacaatttcattattttccttatgtggatgtgattttccccatggaaataccaa |
8250182 |
T |
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| Q |
386 |
ccatccaattgttaaacaagacaccaaatcttacaataattaaactcc |
433 |
Q |
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| T |
8250183 |
ccatccaattgttaaacaagacaccaaatattacaataattaaactcc |
8250230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 8249815 - 8249929
Alignment:
| Q |
17 |
aataaagcatggaatgctcaatatctacttcacaatcggtatgatcgattatgaaactagaggaccactaaatatcaaatcaaataccatatcgaattat |
116 |
Q |
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| T |
8249815 |
aataaagcatggaatgctcaatatctacttcacaatcggtatgatcgattatgaaactagaggaccattaaatatcaaatcaaatgccatatcg-attat |
8249913 |
T |
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| Q |
117 |
gaaactagaggaccat |
132 |
Q |
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| T |
8249914 |
gaaactagaggaccat |
8249929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 8265173 - 8265287
Alignment:
| Q |
17 |
aataaagcatggaatgctcaatatctacttcacaatcggtatgatcgattatgaaactagaggaccactaaatatcaaatcaaataccatatcgaattat |
116 |
Q |
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| T |
8265173 |
aataaagcatggaatgctcaatacctacttcacaatcggtatgatcgattatgaaactagaggaccgttaaatatcaaatcaaataccatatcg-attat |
8265271 |
T |
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| Q |
117 |
gaaactagaggaccat |
132 |
Q |
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| T |
8265272 |
gaaactagaggaccat |
8265287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 8249905 - 8249945
Alignment:
| Q |
60 |
atcgattatgaaactagaggaccactaaatatcaaatcaaa |
100 |
Q |
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| T |
8249905 |
atcgattatgaaactagaggaccattaaatatcaaatcaaa |
8249945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 8265263 - 8265303
Alignment:
| Q |
60 |
atcgattatgaaactagaggaccactaaatatcaaatcaaa |
100 |
Q |
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| T |
8265263 |
atcgattatgaaactagaggaccattaaatatcaaatcaaa |
8265303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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