View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_23 (Length: 403)
Name: NF5916_low_23
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 189 - 389
Target Start/End: Complemental strand, 24293604 - 24293403
Alignment:
| Q |
189 |
gagaagtatgaggcacatatatgggtgtattagaaaagaaa-taatagtcacgaaaagcaacccaatttcgaagcacttggatatcaaacaaaaccaagc |
287 |
Q |
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| T |
24293604 |
gagaagtatgaggcacatatatgggtgtattagaaaaaaaaataatagtcacgaaaagcaacccaatttcgaagcactcggatatcaaacaaaaccaagc |
24293505 |
T |
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| Q |
288 |
ccaactcgtgataaaattgtactgagtaagaggattataaagaaattaacagtaatttgaaggtctaaaactaacatttatgaatttgttgatgttggtg |
387 |
Q |
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| T |
24293504 |
ccaactcgtgataaaattgtactgagtaagaggattataaagaaattaacagtaatttgaaggtctaaaactaacatttatgaatttgttgatgttggtg |
24293405 |
T |
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| Q |
388 |
gt |
389 |
Q |
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|| |
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| T |
24293404 |
gt |
24293403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24293788 - 24293691
Alignment:
| Q |
1 |
tataacaactttagtaaaagtgataatttttaaattttcataccaaggaaacnnnnnnnccgtcagaatgttaactttgagaacgtatttagtccaaa |
98 |
Q |
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| T |
24293788 |
tataacaagtttatgaaaagtgatattttttaaattttgatgccaacgaaacaaaaaaaccttcagaatgttaactttgagaacctatttagtccaaa |
24293691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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