View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916_low_27 (Length: 362)

Name: NF5916_low_27
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916_low_27
NF5916_low_27
[»] chr5 (1 HSPs)
chr5 (230-276)||(712830-712875)
[»] chr4 (2 HSPs)
chr4 (231-277)||(39007660-39007706)
chr4 (51-84)||(35959349-35959382)
[»] chr8 (1 HSPs)
chr8 (50-129)||(34336211-34336291)
[»] chr2 (1 HSPs)
chr2 (230-278)||(12831212-12831260)


Alignment Details
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 712875 - 712830
Alignment:
Q  230 ccaatttatttttcaaaaacttaaaacattaatttttctcaataaat 276  Q
    ||||||||||||||||||| || || |||||||||||||||||||||    
T  712875 ccaatttatttttcaaaaagttgaa-cattaatttttctcaataaat 712830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 277
Target Start/End: Complemental strand, 39007706 - 39007660
Alignment:
Q  231 caatttatttttcaaaaacttaaaacattaatttttctcaataaata 277  Q
    |||||||||| ||  ||| ||||||||||||||||||||||||||||    
T  39007706 caatttatttatcgtaaagttaaaacattaatttttctcaataaata 39007660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 35959349 - 35959382
Alignment:
Q  51 aaagatttctccatttccctttatattttccacc 84  Q
    |||||||||||||||||||| |||||||||||||    
T  35959349 aaagatttctccatttccctctatattttccacc 35959382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 34336211 - 34336291
Alignment:
Q  50 gaaagatttctccatttccctttatattttccacct-tcaaagttcttctttctcctccactccaaattcacaaacaaagc 129  Q
    |||||||||||||||||  | | ||||||||||||  |||||||  | | ||||||||| ||||||| |||||||||||||    
T  34336211 gaaagatttctccatttttcctcatattttccacccctcaaagtcttccattctcctcccctccaaactcacaaacaaagc 34336291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 278
Target Start/End: Original strand, 12831212 - 12831260
Alignment:
Q  230 ccaatttatttttcaaaaacttaaaacattaatttttctcaataaatac 278  Q
    ||||||||||||||||||| || ||| | || |||||||||||||||||    
T  12831212 ccaatttatttttcaaaaatttcaaaaaatattttttctcaataaatac 12831260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University