View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_low_28 (Length: 337)
Name: NF5916_low_28
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_28 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 29204430 - 29204106
Alignment:
| Q |
13 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204430 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
29204331 |
T |
|
| Q |
113 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204330 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
29204231 |
T |
|
| Q |
213 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaaaccattaattgggctagcacgaaggctacggattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29204230 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaaaccattaattgggctagcacgaaggctacggattg |
29204131 |
T |
|
| Q |
313 |
tatcatcatccactgaactctcttc |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29204130 |
tatcatcatccactgaactctcttc |
29204106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 12647446 - 12647770
Alignment:
| Q |
13 |
ataatactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12647446 |
ataatactagttttattttacaacttcaggaatggatacatgctttttgtatgcactgtttaataacatagtttgctaaatcaatctctctagctttgtt |
12647545 |
T |
|
| Q |
113 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12647546 |
tctgcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtcca |
12647645 |
T |
|
| Q |
213 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaaaccattaattgggctagcacgaaggctacggattg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12647646 |
aacgcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaaaccattaattgggctagcacgaaggctacggattg |
12647745 |
T |
|
| Q |
313 |
tatcatcatccactgaactctcttc |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
12647746 |
tatcatcatccactgaactctcttc |
12647770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University