View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_29 (Length: 335)
Name: NF5916_low_29
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 3209143 - 3208841
Alignment:
| Q |
21 |
aggaagaatctcatg-ctcgaaaaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgta |
119 |
Q |
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| T |
3209143 |
aggaagaatctcatggctgaaaaaagtttttgaattgattccagccaaattcattggtttactctataagaaatgacaaccaaaaat-tctgttcctgta |
3209045 |
T |
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| Q |
120 |
gcc-tatgaatgaagaaaatatagttcatggcttctttttt----ctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgaca |
214 |
Q |
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||| |||||||||||| |||| ||||||||||||||||| | ||| ||||||||||||||||| |||||||||||||||| |||||||||| || || |
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| T |
3209044 |
gccgtatgaatgaagacaata-agttcatggcttcttttctttctctgttgatataaatttgcaatggtttttattctcattttgccgttatgagtggca |
3208946 |
T |
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| Q |
215 |
cgaagtgaaaacaaattct-aaatctcactcttttaactgatatctctcttttcca-ttacagattataaatgtgcttgacgggtctgaaaaccctcagt |
312 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||||||||||||||||||||| || |
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| T |
3208945 |
cgaagtgaaaacaaattctaaaatctcactcttttcactgatatctctcttttccatttgcagattgcaaatctgcttgacgggtctgaaaaccctctgt |
3208846 |
T |
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| Q |
313 |
gcacc |
317 |
Q |
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||||| |
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| T |
3208845 |
gcacc |
3208841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 15992270 - 15992557
Alignment:
| Q |
21 |
aggaagaatctcatg-ctcgaaaaagtttttgaattatttccagccaaattcataggtttactctataagaaatgacaaccnnnnnnntctgtttttgta |
119 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |
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| T |
15992270 |
aggaagaatctcatggctggaaaaagtttttgaattatttccagccaaattcattggttctctctataagaaatgacaaccaaaaaa-tctgtttctgta |
15992368 |
T |
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| Q |
120 |
gcctatgaatgaagaaaatatagttcatggcttcttttttctgctgatataaatttgcaatagtttttattctcatttcgccgttatgaatgacacgaag |
219 |
Q |
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| T |
15992369 |
gcctatgaatgaagaaaatatagttcatggctcctttttt-tgttgatataaatttgcaatagtttctattctca---------tatgaacgacacgaag |
15992458 |
T |
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| Q |
220 |
tgaaaacaaattct-aaatctcactcttttaactgatatctctcttttccat-tacagattataaatgtgcttgacgggtctgaaaaccctcagtgcac |
316 |
Q |
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|||||||||||||| ||||||| | |||| |||||||||||| ||||||| | |||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
15992459 |
tgaaaacaaattctaaaatctcctttttttcactgatatctcttgtttccatatgcagattgtaaatcggcttgacgggtctgaaaaccctcagtgcac |
15992557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 37491933 - 37491994
Alignment:
| Q |
18 |
tagaggaagaatctcatgctcgaaaaagtttttgaattatttccagccaaattcataggttt |
79 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37491933 |
tagaggaagaatctcatgctcgaaaaagtttttgaattatttccagccaaattcataggttt |
37491994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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