View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_3 (Length: 628)
Name: NF5916_low_3
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 9 - 447
Target Start/End: Original strand, 32267408 - 32267846
Alignment:
| Q |
9 |
agcaaaggaagaaggccctctagagggtg--ggagtgaatagtcagatcatcatcatttgaagctcctagtttgactataaagtctgcacactggtttaa |
106 |
Q |
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| T |
32267408 |
agcaaaggaagaaggccctctggatggtgtgggagtgattagtcagatcatcatcatttgaagctcctagtttggctacaaagtatgcacaccggtttaa |
32267507 |
T |
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| Q |
107 |
tttgagattgaatatgtcttgcattcttcttaataaagtggtttcttatattnnnnnnnn--cgatcacacctttgttaggtacaaaccaaatgacatcc |
204 |
Q |
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| T |
32267508 |
tttgagattgaatatgtcttgcattcttcttaataaagtggtttcttatattaaaaaaaaaacgatcacacctttgttaggtaccaaccaaatgacatcc |
32267607 |
T |
|
| Q |
205 |
aataaatgacacatcaaattttaggactgaaattttaccatgacccaacgtttcaatgtactatcaaaagtgccgaattttagaacccacgtacggtagg |
304 |
Q |
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| T |
32267608 |
aataaatgacacatcaaattttaggactgaaattttaccatgacccaacgtttcaatgtactatcaaaactgccgaattttagaacccacg----gtagg |
32267703 |
T |
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| Q |
305 |
nnnnnnnnnnnnnnnncaattctttacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactctacatatatgaacact |
404 |
Q |
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| T |
32267704 |
aaaaataaaaaataaaaaattctttacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactctacatatatgaacact |
32267803 |
T |
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| Q |
405 |
tttatccattctccaaaactattcatgaagaatcatatttgta |
447 |
Q |
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| T |
32267804 |
tttatccattctccaaaactattcatgaagaatcatatttgta |
32267846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 486 - 613
Target Start/End: Original strand, 32267860 - 32267987
Alignment:
| Q |
486 |
acacgataaataattgtaagaaagtgttatgatattgttcgaattagtagagaaagttttatgatatatagtttccttcaacctgtacataaatattgaa |
585 |
Q |
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| T |
32267860 |
acacgataaataattgtaagaaagtgttatgatattgttcgaattagtagagaaagttttatgatatatagtttccttcaacctgtacataaatattgaa |
32267959 |
T |
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| Q |
586 |
caaatcattcatgtatttaaattcaagt |
613 |
Q |
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| T |
32267960 |
caaatcattcatgtatttaaattcaagt |
32267987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 329 - 542
Target Start/End: Original strand, 32271836 - 32272045
Alignment:
| Q |
329 |
tacatccaccgaatatgtaatgataaaaatatgtctaccgtaatttatcttgctacactc--tacatatatgaacacttttatccattctccaaaactat |
426 |
Q |
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| T |
32271836 |
tacatccaccgaatatgta--gataaaaatatgtatacaataatttatcttgctacactcaatacataaatgaacccttttatccattctccaaaa-tat |
32271932 |
T |
|
| Q |
427 |
tcatgaagaatcatatttgtagaacctagaaggaatcactaaatagtaattcctaaatgacacgataaataattgtaagaaagtgttatgatattgttcg |
526 |
Q |
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| T |
32271933 |
tcatgaa---tcatatctatagaaacttgaagaaatcactaaatagtagttccaaaatgacacaacaaataattgtaagaaagtgttatgatattgttcg |
32272029 |
T |
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| Q |
527 |
aattagtagagaaagt |
542 |
Q |
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| T |
32272030 |
aattagtagaaaaagt |
32272045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 32271744 - 32271809
Alignment:
| Q |
227 |
aggactgaaattttaccatgacccaacgtttcaatgtactatcaaaagtgccgaattttagaacccacg |
295 |
Q |
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| T |
32271744 |
aggactgaaattttaccatggcccaacgtttgaatg---tatcaaaagtgccgaattttagaacccacg |
32271809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 14446684 - 14446615
Alignment:
| Q |
211 |
tgacacatcaaattttaggactgaaattttaccatgacccaacgtttcaatgtactatcaaaagtgccgaatt |
283 |
Q |
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| T |
14446684 |
tgacacctcaaattgaaggactgaaattttaccatggtccaacgtttgaatg---tatcataagtgccgaatt |
14446615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 396 - 542
Target Start/End: Original strand, 48169925 - 48170069
Alignment:
| Q |
396 |
atgaacacttttatccattctccaaaac-tattcatgaagaatcatatttgtagaacctagaaggaatcactaaatagtaattcctaaatgacacgataa |
494 |
Q |
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||||||||||| ||| |||||||||| |||||||||| |||||||| || |||||||||||||||| | || ||| || | ||| |||| ||||| |
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| T |
48169925 |
atgaacactttagtcctttctccaaaaaatattcatgaa---tcatatttataaaacctagaaggaatcattggatggtagtttcaaaaagacatgataa |
48170021 |
T |
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| Q |
495 |
ataattgtaagaaagtgttatgatattgttcgaattagtagagaaagt |
542 |
Q |
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|||||||||||||| |||||| ||||||||| |||||||||||||||| |
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| T |
48170022 |
ataattgtaagaaactgttataatattgttcaaattagtagagaaagt |
48170069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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