View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_30 (Length: 325)
Name: NF5916_low_30
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 44271832 - 44271536
Alignment:
| Q |
19 |
cttggacctcggtttcttggtccgcttgctattatgaggatttggagtttctgtttgttctatgtcatggctgaattgtgggggagtgttgtgatttctg |
118 |
Q |
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| T |
44271832 |
cttggacctcggtttcttggtccgcttgctattatgaggatttggagtttctgtttgttctatgtcatggctgaattgtgggggagtgttgtgatttctg |
44271733 |
T |
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| Q |
119 |
tcctgttttgggggcttgccaatcaggtaatttcattattttggctttgatgctttgttattatcagttcatttttggattggttctgtctgttgtagta |
218 |
Q |
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| T |
44271732 |
tcctgttttgggggcttgccaatcaggtaatttcattattttggctttgatgctttgttattatcagttcatttttggattggttctgtctgttgtagta |
44271633 |
T |
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| Q |
219 |
tttcatatgatcattttttaattctggtgtcctaaactaaacatgccatcttattattatcctaaacatgatgatcatttgacgagtttgtcctatg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44271632 |
tttcatatgatcattttttaattctggtgtcctaaactaaacatgccatcttattattatcctaaacatgatgatcatttgacgagtttgttctatg |
44271536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 2808645 - 2808773
Alignment:
| Q |
19 |
cttggacctcggtttcttggtccgcttgctattatgaggatttggagtttctgtttgttctatgtcatggctgaattgtgggggagtgttgtgatttctg |
118 |
Q |
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||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
2808645 |
cttggtcctaggtttcttggtcctcttgcaattataaggatttggagtttctgtttgttctatgttatggctgaattgtgggggagtgtggttgtttctg |
2808744 |
T |
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| Q |
119 |
tcctgttttgggggcttgccaatcaggta |
147 |
Q |
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| T |
2808745 |
tgctgttttggggttttgctaatcaggta |
2808773 |
T |
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