View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_31 (Length: 324)
Name: NF5916_low_31
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_31 |
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| [»] scaffold0202 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 31093161 - 31093449
Alignment:
| Q |
1 |
tgcttatgaacttgttctaatttcggtgtcacctatttcagaactggttaaaatgctttcccggaactggatgagatcaaaatcattgcgatatggatat |
100 |
Q |
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| T |
31093161 |
tgcttatgaacttgttctaatttcggtgtcacctatttcagaactggttaaaatgctttcccggaactggatgagatcaaaatcattgggatatggatat |
31093260 |
T |
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| Q |
101 |
gcaatatcacattagtggactaaccctctagcttgtttaggaacttgttctaatttcagggatggttacaatcattacttctaaagtgggagtcaggtaa |
200 |
Q |
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| T |
31093261 |
gcaatatcacattagtggactaaccctctagcttgtttaggaacttgttctaatttcagggatggttacaatcattacttctaaagtggtcgtcaggtaa |
31093360 |
T |
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| Q |
201 |
tacaatgttttgaaagtgttggagttttggtgatatgatcggcgtgccttttgatgaatttggagaagaaattctgcttttagggagaa |
289 |
Q |
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| T |
31093361 |
tacaatgttttgaaagtgttggagttgtggtgatatgattggcgtgccttttgatgaatttggagaagaaattcagcttttagggagaa |
31093449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 94 - 287
Target Start/End: Original strand, 1971 - 2179
Alignment:
| Q |
94 |
tggatatgcaatatcacattagtggactaaccctctagcttgtttaggaacttgttct-------aatttcagg--------gatggttacaatcattac |
178 |
Q |
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| T |
1971 |
tggatatgcaatatcacattagtggactaaccctctagcttgtttaggagctggcgctgagtcagaagtacaggagaggtctgatggttacaatcattac |
2070 |
T |
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| Q |
179 |
ttctaaagtgggagtcaggtaatacaatgttttgaaagtgttggagttttggtgatatgatcggcgtgccttttgatgaatttggagaagaaattctgct |
278 |
Q |
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| T |
2071 |
ttctaaagtgggagtcaggtaatgcaatgtttcgaaggttttggagtggtggtggtatgatcggcgtgccttttgaagaatttggagaagaaattcagtt |
2170 |
T |
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| Q |
279 |
tttagggag |
287 |
Q |
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||||||||| |
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| T |
2171 |
tttagggag |
2179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 1925 - 1970
Alignment:
| Q |
33 |
ctatttcagaactggttaaaatgctttcccggaactggatgagatc |
78 |
Q |
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| T |
1925 |
ctatttcagaacaggttaaaatgctttcctggaaccggatgagatc |
1970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 30980 - 31068
Alignment:
| Q |
54 |
tgctttcccggaactggatgagatcaaaatcattgcgatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
142 |
Q |
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|||||||| | |||||||| || |||||||||| | | | |||||||||||||||| | | |||||||||||||||| ||| ||||||| |
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| T |
30980 |
tgctttcctgaaactggataaggtcaaaatcatcgaggtttggatatgcaatatcaaagttgtggactaaccctctaccttttttagga |
31068 |
T |
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