View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_33 (Length: 314)
Name: NF5916_low_33
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 33739290 - 33739542
Alignment:
| Q |
20 |
caaatcatttagagcatgagaaaacagcactaacataacttttaagtttgaattgaaagactaaagtccaggtaaatagaatcaatgaaacagattagtc |
119 |
Q |
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| T |
33739290 |
caaatcatttagagcatgagaaaacagcaataacataacttttaagtttaaattgaaagactaaagtccaggtaaatagaatcaatgaaacagattagtc |
33739389 |
T |
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| Q |
120 |
ataaaacaccattaattaattaatccagtaaacatacacatgacaagaggattttcaagagaaacataaacaaaacaaaaccaagagtcacaggtgtacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33739390 |
ataaaacaccattaattaattaatccagtaaacatacacatgacaagaggattttcaagagaaacataaacaaaacaaaaccaagagtcataggtgtacc |
33739489 |
T |
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| Q |
220 |
actactgctgctacgactatctatggtgataataattatacccaaattccatt |
272 |
Q |
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|||||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33739490 |
actactactactactactatctatggtgataataattatacccaaattccatt |
33739542 |
T |
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