View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_35 (Length: 291)
Name: NF5916_low_35
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10633964 - 10633790
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10633964 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
10633865 |
T |
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| Q |
101 |
attattgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaatagatttggattag |
175 |
Q |
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| T |
10633864 |
attattgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaatagatttgggttag |
10633790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10698264 - 10698113
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
100 |
Q |
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|||||||||||||||| ||||||||||||| ||| ||| ||| || ||||||||||| ||||||||| |||||||||| |||| | ||||| ||| |
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| T |
10698264 |
aataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaatatacacattatggttcatttctcatatctttgtcatg |
10698165 |
T |
|
| Q |
101 |
attattgggctacgtccacatattagaaggaagttgcgaccaatcttgccaa |
152 |
Q |
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|||||| ||||||| ||||| || |||||||||||| ||||| ||||||||| |
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| T |
10698164 |
attattaggctacgcccacaaatgagaaggaagttgagaccactcttgccaa |
10698113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 10693677 - 10693492
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
100 |
Q |
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| T |
10693677 |
aatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggttcatttatcatgtacttgtcatg |
10693578 |
T |
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| Q |
101 |
a------------ttattgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaatagatttggatta |
174 |
Q |
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| T |
10693577 |
ataaaaccctattttatcgtgccacgtcgaaatattagaaggcggttgcgaccaatcttgccaaataattcaatagatttgaatta |
10693492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 10707354 - 10707282
Alignment:
| Q |
102 |
ttattgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaatagatttggatta |
174 |
Q |
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||||||||||||||||| |||| ||||||| ||||||| |||||||||||| |||||||||||||||| |||| |
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| T |
10707354 |
ttattgggctacgtccaaatatgagaaggaggttgcgatcaatcttgccaactacttcaatagatttgaatta |
10707282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 10657554 - 10657381
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
100 |
Q |
| |
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|||||||||||||||| |||||||| | || || | |||||| || ||||||||||| ||| |||||| |||||||||| |||||||| || | ||| |
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| T |
10657554 |
aataatttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccatttacacattatggttcatttgtcatgtacttatcatg |
10657455 |
T |
|
| Q |
101 |
atta------------ttgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaat |
162 |
Q |
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|||| ||||| |||||||||| || |||||||||||||| ||| ||||||||||||||||||| |
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| T |
10657454 |
attagactctgctatattgggttacgtccacaaatgagaaggaagttgcgtccactcttgccaaatacttcaat |
10657381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10707473 - 10707372
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgtatttgtaatg |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||| ||||| | | |||||||| || ||||||| |||| |||||||||| |||||||| |||| ||| |
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| T |
10707473 |
aatagtttctttggtgttgatgttctttccagaaaattgggaaacacttggatactttatcatatatacaatatggttcatttgtcatgtacttgtcatg |
10707374 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
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|
| T |
10707373 |
at |
10707372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 91
Target Start/End: Complemental strand, 10690329 - 10690241
Alignment:
| Q |
3 |
taatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcattagtcatgta |
91 |
Q |
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||||||| |||||| ||||||| | || ||| ||||||| || ||||||| ||| |||||||||||| |||||||||| ||||||| |
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| T |
10690329 |
taatttcattggtgttgatgttgctcccagaaaattggggattatttggatatattatcatatacacaatatggttcatttttcatgta |
10690241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 33777603 - 33777672
Alignment:
| Q |
105 |
ttgggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttcaatagatttggatta |
174 |
Q |
| |
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||||| |||||||||| || |||||||||||||||||| || ||||||||||||||||||||||| |||| |
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| T |
33777603 |
ttggggtacgtccacaaatgagaaggaagttgcgaccactcctgccaaatacttcaatagatttgaatta |
33777672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33777484 - 33777565
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcatt |
82 |
Q |
| |
|
|||| ||||||||||| | |||||| |||| || | |||||||||| | ||||||| ||||||||||| ||||||||||| |
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| T |
33777484 |
aatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatcatatacacagcatggttcatt |
33777565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 33775167 - 33775219
Alignment:
| Q |
108 |
ggctacgtccacatattagaaggaagttgcgaccaatcttgccaaatacttca |
160 |
Q |
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|||||||||||| || ||||||||||||| |||| || |||||||||||||| |
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| T |
33775167 |
ggctacgtccacgaatgagaaggaagttgccaccactcgtgccaaatacttca |
33775219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15240505 - 15240586
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcatt |
82 |
Q |
| |
|
||||||||||||||| |||||||||| || | | ||||||| || ||||||||||| ||||||||||| |||||||||| |
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| T |
15240505 |
aataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatt |
15240586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15246836 - 15246906
Alignment:
| Q |
1 |
aataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaa |
71 |
Q |
| |
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|||||||||||||||| |||||||||| || || | ||||||| || |||||||||| |||||| ||||| |
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| T |
15246836 |
aataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacattatcatatgcacaa |
15246906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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