View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_42 (Length: 262)
Name: NF5916_low_42
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1531788 - 1531536
Alignment:
| Q |
1 |
acaagctctaattgttaatatcaaagatgaaagatagtagagaaatattgaaatgtaaaactcactgtatttaatatatataagaaattaga----aata |
96 |
Q |
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| T |
1531788 |
acaagctctaattgttaatatcaaagatgaaagatagtaaagaaatattgaaaggtaaaactcactgtattt----gatataagaaattagaaattaata |
1531693 |
T |
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| Q |
97 |
taaagacataatcctattactgctgccataaactagaaaactaaaacttgaatatcttcaaggtcttgaagaagcataacttgattggctaaaaaacttg |
196 |
Q |
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| T |
1531692 |
taaagacataatcctattactgctgccataaactagaaaactaaaacttgaatatcttcaaggtcttgaagaagcataacttgattggctaaaaaacttg |
1531593 |
T |
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| Q |
197 |
tttgccacaacattccttatatctttcatctgttgaaccaaattctcccacctttgc |
253 |
Q |
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| T |
1531592 |
tttgccacaacattccttatatctttcatctgttgaaccaaattctcccacctttgc |
1531536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 23053606 - 23053686
Alignment:
| Q |
171 |
cataacttgattggctaaaaaacttgtttgccacaacattccttatatctttcatctgttgaaccaaattctcccacctttgc |
253 |
Q |
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| T |
23053606 |
cataacttgattgactaaaa--cttgtttgccacaacattctttatatctttcatatgttgaaccaaatcattccacctttgc |
23053686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 23053436 - 23053529
Alignment:
| Q |
8 |
ctaattgttaatatcaaagatgaaagatagtagagaaatattgaaatgtaaaactcactgtatttaatatatataagaaattagaaatataaagacataa |
107 |
Q |
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| T |
23053436 |
ctaattgttaatat-aaagatgaaaag--gtacagaaatattgaaaggtaaaactcattgtatttaatat----aagaaattagaaatataaagacataa |
23053528 |
T |
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