View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_43 (Length: 261)
Name: NF5916_low_43
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_43 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 5694077 - 5693831
Alignment:
| Q |
15 |
gatgatccaaggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgca |
114 |
Q |
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| T |
5694077 |
gatgatccaaggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgca |
5693978 |
T |
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| Q |
115 |
cctttagcaatcacatcatcttcatatttcaatggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctt |
214 |
Q |
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| T |
5693977 |
cccttagcaatcacatcatcttcatatttcaatggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctt |
5693878 |
T |
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| Q |
215 |
taagcatatcaatgtttgcgcaagtgtttccttcattttttggtttt |
261 |
Q |
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| T |
5693877 |
taagcatatcaatgtttgcgcaagtgtttccttcgttttttggtttt |
5693831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 5684201 - 5683955
Alignment:
| Q |
15 |
gatgatccaaggggcaggatttgacaaactatgtggaaaaggaccaaaatttccagcactacaaacaaccacaatgtttttccttacagcttgtaatgca |
114 |
Q |
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|||||||||||||| |||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5684201 |
gatgatccaaggggaaggatttgacaaactatgaggagaagggccagcatttccagcactacaaacaacaacaatgtttttccttacagcttgtaatgca |
5684102 |
T |
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| Q |
115 |
cctttagcaatcacatcatcttcatatttcaatggaccataatgccctatggaaatgcttaaaacatcaacaccatcttcaattgcatcatctatagctt |
214 |
Q |
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| T |
5684101 |
cccttagcaatcacatcatcctcatatttcaatggcgcaggaaacccaatggaaaggtttataacatcaacaccatcttcaattgcatcatctatagctt |
5684002 |
T |
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| Q |
215 |
taagcatatcaatgtttgcgcaagtgtttccttcattttttggtttt |
261 |
Q |
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| T |
5684001 |
taagcatatcaatgttagtgcaaacatttccatcattttttggtttt |
5683955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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