View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_49 (Length: 242)
Name: NF5916_low_49
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 2756663 - 2756439
Alignment:
| Q |
1 |
tatgcagagttgatgattttgggttttatttcactttttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcata |
100 |
Q |
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| T |
2756663 |
tatgcagagttgatgattttgggttttatttcactgtttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcata |
2756564 |
T |
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| Q |
101 |
tgcttccttgtagtattaatggggacgatgaagtcaaagaaacaaaattaccatccaagtcacattttcagacttttttctcttccaaggatgtttttgg |
200 |
Q |
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| T |
2756563 |
tgcttccttgtagtattaatggggacgatgaagtcaaagaaacaaaattaccatccaagtcacattttcagacttttttctcttccaaggatgtttttgg |
2756464 |
T |
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| Q |
201 |
cactgctaggcgccttctaggtgac |
225 |
Q |
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|||||||| |||||||||||||||| |
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| T |
2756463 |
cactgctaagcgccttctaggtgac |
2756439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 2748606 - 2748493
Alignment:
| Q |
1 |
tatgcagagttgatgattttgggttttatttcactttttctaacggtaacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcata |
100 |
Q |
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||||||||||||||| | ||||| || ||||| || ||||| || |||||||||||||||| | ||||||||||||||| | || |||||| ||||| |
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| T |
2748606 |
tatgcagagttgatgctgttgggattcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcata |
2748507 |
T |
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| Q |
101 |
tgcttccttgtagt |
114 |
Q |
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|||||||||||||| |
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| T |
2748506 |
tgcttccttgtagt |
2748493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 2748456 - 2748393
Alignment:
| Q |
160 |
tcacattttcagacttttttctcttccaaggatgtttttggcactgctaggcgccttctaggtg |
223 |
Q |
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|||||||||||||||||||||||||| | ||||| |||||||||| |||||||||| |||| |
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| T |
2748456 |
tcacattttcagacttttttctcttcggatcttgtttctggcactgctcggcgccttcttggtg |
2748393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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