View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_53 (Length: 238)
Name: NF5916_low_53
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_53 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 2895298 - 2895077
Alignment:
| Q |
18 |
atctctcgcgacatataaatttacatttatcaaaactcttcacttcaatct-aaaagagaagctgatatgaatacgactagatgggtaatgaactctagc |
116 |
Q |
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| T |
2895298 |
atctctcgcgacatataaatttacatttatcaaaactctccacttcaatcttaaaagagaaggtgatatgaatacgactagatgggtaatgaactctagc |
2895199 |
T |
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| Q |
117 |
tttagttactttcatttatgtatttttgttagattaaatatactccttccggtctcgaatgtaagaaataaaacnnnnnnnnttgatagtctcaaatgta |
216 |
Q |
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| T |
2895198 |
tttagttactttcatttatgtattgttgttagattaaatatactccttccggtctcgaatgtaagaaataaaacaaaaataattgatagtctcaaatgta |
2895099 |
T |
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| Q |
217 |
agtaaaagtataattaaattac |
238 |
Q |
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| T |
2895098 |
agtaaaagtataattaaattac |
2895077 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 27411979 - 27412011
Alignment:
| Q |
157 |
tactccttccggtctcgaatgtaagaaataaaa |
189 |
Q |
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| T |
27411979 |
tactccctccggtctcgaatgtaagaaataaaa |
27412011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 6568280 - 6568244
Alignment:
| Q |
154 |
atatactccttccggtctcgaatgtaagaaataaaac |
190 |
Q |
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| T |
6568280 |
atatactccctccggtctcgaatgtaagaaacaaaac |
6568244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 123394 - 123358
Alignment:
| Q |
154 |
atatactccttccggtctcgaatgtaagaaataaaac |
190 |
Q |
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| T |
123394 |
atatactccctccggtctcgaatgtaagaaacaaaac |
123358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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