View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916_low_57 (Length: 234)

Name: NF5916_low_57
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916_low_57
NF5916_low_57
[»] chr8 (7 HSPs)
chr8 (1-229)||(10633293-10633514)
chr8 (1-57)||(28192544-28192600)
chr8 (1-63)||(34010508-34010571)
chr8 (1-39)||(6785664-6785702)
chr8 (1-57)||(27910-27964)
chr8 (1-57)||(8878607-8878663)
chr8 (1-37)||(36102407-36102443)
[»] scaffold0936 (2 HSPs)
scaffold0936 (3-57)||(825-879)
scaffold0936 (3-37)||(925-959)
[»] chr2 (6 HSPs)
chr2 (3-57)||(36072982-36073036)
chr2 (3-57)||(21010975-21011029)
chr2 (1-57)||(41312114-41312171)
chr2 (1-37)||(21971259-21971295)
chr2 (1-57)||(27281972-27282027)
chr2 (3-55)||(41438034-41438086)
[»] chr6 (7 HSPs)
chr6 (1-36)||(5491406-5491441)
chr6 (1-63)||(10402029-10402091)
chr6 (1-30)||(1377019-1377048)
chr6 (1-30)||(1384767-1384796)
chr6 (1-57)||(11261683-11261739)
chr6 (1-37)||(18804497-18804533)
chr6 (9-57)||(28667210-28667258)
[»] chr4 (10 HSPs)
chr4 (76-131)||(13635270-13635324)
chr4 (3-57)||(45429211-45429266)
chr4 (1-39)||(25108516-25108554)
chr4 (3-57)||(29965018-29965072)
chr4 (3-57)||(35120188-35120242)
chr4 (3-57)||(35683505-35683558)
chr4 (3-57)||(36637755-36637809)
chr4 (1-57)||(25811271-25811327)
chr4 (1-37)||(38026467-38026503)
chr4 (2-57)||(44569389-44569442)
[»] chr3 (8 HSPs)
chr3 (76-131)||(265639-265694)
chr3 (1-39)||(16146914-16146952)
chr3 (1-57)||(9693227-9693284)
chr3 (76-133)||(28824575-28824632)
chr3 (1-37)||(3106811-3106847)
chr3 (1-37)||(10522938-10522974)
chr3 (1-37)||(22201514-22201550)
chr3 (1-57)||(55384306-55384361)
[»] chr1 (7 HSPs)
chr1 (1-36)||(44242819-44242854)
chr1 (1-57)||(3336452-3336509)
chr1 (1-54)||(28236164-28236217)
chr1 (1-38)||(47870863-47870900)
chr1 (1-37)||(9003886-9003922)
chr1 (1-57)||(22866636-22866691)
chr1 (1-37)||(33826227-33826263)
[»] chr7 (2 HSPs)
chr7 (1-37)||(33690590-33690626)
chr7 (1-37)||(45864127-45864163)
[»] chr5 (2 HSPs)
chr5 (1-37)||(36976864-36976900)
chr5 (1-37)||(39814563-39814599)


Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 10633514 - 10633293
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatattgtaattcttgnnnnnnnctcattcaaaaatatgaaatgtacac 100  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||        ||| |       ||||||||||||||||||||||||||    
T  10633514 ttaatttatgttttattaaaaaattctaatgtttttgagagagattcttataat--------tctagaaaaaa-ctcattcaaaaatatgaaatgtacac 10633424  T
Q  101 atggtttgatttaaaagtaaggaccaaaagtgaggacataaacaatcttaaagataaaaaattgaattaaaattctagagggagtaaaaggt--atttaa 198  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  | ||||    
T  10633423 atgggttgatttaaaagtaaggaccaaaagtgaggacataaacaattttaaagataaaaaattgaattaaaattctagagggagtaaaaggtaaacttaa 10633324  T
Q  199 aagtttttatggagagtacgctctttctctg 229  Q
    ||||||||||||||||||||| || ||||||    
T  10633323 aagtttttatggagagtacgcgctctctctg 10633293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28192600 - 28192544
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| |||||||||||||| |||||||| ||||||  ||| ||||||||||||||    
T  28192600 ttaattcatgttttattaaaatattctaatttttttggaagacattcttataatatt 28192544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34010571 - 34010508
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaa-tgtttttgatagatattcttataatattgtaatt 63  Q
    |||||| ||||||| |||||||||||||| | ||||||  |||||||||||||||||| |||||    
T  34010571 ttaattcatgttttgttaaaaaattctaattttttttggaagatattcttataatattataatt 34010508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6785664 - 6785702
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgat 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  6785664 ttaatttatgttttgttaaaaaattctaatttttttgat 6785702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27964 - 27910
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| |||||| |||||||||||||||| |||||  |||| ||||||||||||||    
T  27964 ttaattcatgtttaattaaaaaattctaattttttt--tagagattcttataatatt 27910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8878607 - 8878663
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| ||||||| ||||||||||||||| ||||| | ||| ||||| ||||||||    
T  8878607 ttaattcatgttttgttaaaaaattctaattttttttagagagattctaataatatt 8878663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36102407 - 36102443
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  36102407 ttaatttatgttttgttaaaaaattctaatttttttg 36102443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0936 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0936
Description:

Target: scaffold0936; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 879 - 825
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  879 aattcatgttttgttaaaaaattctaattttttttaaagatattcttataatatt 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0936; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 925 - 959
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||||||||||||||||| ||||||    
T  925 aatttatgttttattaaaaaattctaatttttttg 959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 36073036 - 36072982
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||||| ||||||||||||||| ||||||| ||| ||||||||||||||    
T  36073036 aattcatgttttgttaaaaaattctaatttttttgagagagattcttataatatt 36072982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 21010975 - 21011029
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||| | ||||||||||||||| ||||||  ||||||||||||||||||    
T  21010975 aattcatgttcttttaaaaaattctaatttttttgggagatattcttataatatt 21011029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41312171 - 41312114
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgat-agatattcttataatatt 57  Q
    ||||| |||||||| ||||||||||||||| ||||| || ||| ||||||||||||||    
T  41312171 ttaatctatgttttgttaaaaaattctaatttttttcatgagaaattcttataatatt 41312114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21971295 - 21971259
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  21971295 ttaatttatgttttgttaaaaaattctaatttttttg 21971259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27282027 - 27281972
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| ||||||| ||||||||||||| | |||||| |||| ||||||||||||||    
T  27282027 ttaattcatgttttgttaaaaaattctattttttttg-tagacattcttataatatt 27281972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 41438086 - 41438034
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataata 55  Q
    |||| ||||||| ||||||||||||||| ||||||  ||| ||||||||||||    
T  41438086 aattcatgttttgttaaaaaattctaatttttttgggagagattcttataata 41438034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5491406 - 5491441
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgttttt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  5491406 ttaatttatgttttattaaaaaattctaatattttt 5491441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 10402091 - 10402029
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatattgtaatt 63  Q
    |||||| || |||||||||||||||||||| |||||   ||| |||||||||||||| |||||    
T  10402091 ttaattcatcttttattaaaaaattctaattttttttgaagagattcttataatattataatt 10402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1377019 - 1377048
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaat 30  Q
    ||||||||||||||||||||||||||||||    
T  1377019 ttaatttatgttttattaaaaaattctaat 1377048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1384767 - 1384796
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaat 30  Q
    ||||||||||||||||||||||||||||||    
T  1384767 ttaatttatgttttattaaaaaattctaat 1384796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11261683 - 11261739
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| ||||||| |||||||||||||||  |||||  ||| ||||||||||||||    
T  11261683 ttaattcatgttttgttaaaaaattctaattattttgggagaaattcttataatatt 11261739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18804533 - 18804497
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18804533 ttaatttatgttttgttaaaaaattctaatttttttg 18804497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 28667258 - 28667210
Alignment:
Q  9 tgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| ||||||||||||||| ||||||  ||| ||||||||||||||    
T  28667258 tgttttgttaaaaaattctaatttttttgggagagattcttataatatt 28667210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 13635270 - 13635324
Alignment:
Q  76 tcattcaaaaatatgaaatgtacacatggtttgatttaaaagtaaggaccaaaagt 131  Q
    |||||||||||||||||   ||||||||| ||||||||||||||| ||||||||||    
T  13635270 tcattcaaaaatatgaagactacacatgggttgatttaaaagtaa-gaccaaaagt 13635324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 45429266 - 45429211
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgt-ttttgatagatattcttataatatt 57  Q
    |||||||||||| ||||||||||||||||| |||||  ||| ||||||||||||||    
T  45429266 aatttatgttttgttaaaaaattctaatgttttttgggagagattcttataatatt 45429211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25108554 - 25108516
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgat 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  25108554 ttaatttatgttttgttaaaaaattctaatttttttgat 25108516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 29965072 - 29965018
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||||| ||||||||||||||| ||||||  ||| ||||||||||||||    
T  29965072 aattcatgttttgttaaaaaattctaatttttttgggagagattcttataatatt 29965018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 35120188 - 35120242
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||||| ||||||||||||||| ||||||  ||| ||||||||||||||    
T  35120188 aattcatgttttgttaaaaaattctaatttttttgggagagattcttataatatt 35120242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 35683558 - 35683505
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||| ||||||| |||||||| |||||| ||||||| ||||||||||||||||||    
T  35683558 aattcatgttttgttaaaaaaatctaat-tttttgagagatattcttataatatt 35683505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 36637809 - 36637755
Alignment:
Q  3 aatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||||||||||||||||||||||||  |||||   ||| ||||||||||||||    
T  36637809 aatttatgttttattaaaaaattctaaatttttttggagagattcttataatatt 36637755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25811271 - 25811327
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| |||||||  |||||||||||||| ||||||  ||| ||||||||||||||    
T  25811271 ttaattcatgttttggtaaaaaattctaatttttttgggagaaattcttataatatt 25811327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38026467 - 38026503
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  38026467 ttaatttatgttttgttaaaaaattctaatatttttg 38026503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 44569442 - 44569389
Alignment:
Q  2 taatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    ||||| ||||||| ||||||||||||||| |||| |  ||||||||||||||||||    
T  44569442 taattcatgttttgttaaaaaattctaatcttttgg--agatattcttataatatt 44569389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 265639 - 265694
Alignment:
Q  76 tcattcaaaaatatgaaatgtacacatggtttgatttaaaagtaaggaccaaaagt 131  Q
    |||||||||||||||||  |||||||||  ||||||||||| ||||||| ||||||    
T  265639 tcattcaaaaatatgaatggtacacatgagttgatttaaaaataaggactaaaagt 265694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 16146914 - 16146952
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgat 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  16146914 ttaatttatgttttgttaaaaaattctaatttttttgat 16146952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9693284 - 9693227
Alignment:
Q  1 ttaatttatgttttattaaaaaattcta-atgtttttgatagatattcttataatatt 57  Q
    |||||||||||||| ||||||||||||| || |||||   ||||||||||||||||||    
T  9693284 ttaatttatgttttgttaaaaaattctatattttttttggagatattcttataatatt 9693227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 28824575 - 28824632
Alignment:
Q  76 tcattcaaaaatatgaaatgtacacatggtttgatttaaaagtaaggaccaaaagtga 133  Q
    |||||||||||| ||||   |||||||| ||||||||||||| || ||||||||||||    
T  28824575 tcattcaaaaatctgaaggatacacatgatttgatttaaaagcaaagaccaaaagtga 28824632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3106847 - 3106811
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  3106847 ttaatttatgttttgttaaaaaattctaatttttttg 3106811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10522974 - 10522938
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  10522974 ttaatttatgttttgttaaaaaattctaatttttttg 10522938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22201514 - 22201550
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  22201514 ttaatttatgttttgttaaaaaattctaatttttttg 22201550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55384361 - 55384306
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||| ||||||| ||||||||||||| | ||||||  ||||||||||||||||||    
T  55384361 ttaattcatgttttgttaaaaaattctattttttttg-gagatattcttataatatt 55384306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44242819 - 44242854
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgttttt 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  44242819 ttaatttatgttttattaaaaaattctaattttttt 44242854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3336509 - 3336452
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttga-tagatattcttataatatt 57  Q
    |||||| ||||||| ||||||||||||||| ||||| | |||| ||||||||||||||    
T  3336509 ttaattcatgttttgttaaaaaattctaattttttttagtagagattcttataatatt 3336452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28236164 - 28236217
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataat 54  Q
    |||||| ||||||| ||||||||||||||| |||||  |||| |||||||||||    
T  28236164 ttaattcatgttttgttaaaaaattctaattttttttttagagattcttataat 28236217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47870900 - 47870863
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttga 38  Q
    |||||||||||||||||||||||||||||  |||||||    
T  47870900 ttaatttatgttttattaaaaaattctaacttttttga 47870863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9003922 - 9003886
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  9003922 ttaatttatgttttgttaaaaaattctaatttttttg 9003886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22866691 - 22866636
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttgatagatattcttataatatt 57  Q
    |||||||||||||| ||||| ||||||||| ||||||  ||| ||||||||||||||    
T  22866691 ttaatttatgttttgttaaacaattctaatttttttg-gagagattcttataatatt 22866636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33826227 - 33826263
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  33826227 ttaatttatgttttgttaaaaaattctaatttttttg 33826263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33690590 - 33690626
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  33690590 ttaatttatgttttcttaaaaaattctaatttttttg 33690626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45864163 - 45864127
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  45864163 ttaatttatgttttgttaaaaaattctaatttttttg 45864127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36976900 - 36976864
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  36976900 ttaatttatgttttgttaaaaaattctaatttttttg 36976864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39814599 - 39814563
Alignment:
Q  1 ttaatttatgttttattaaaaaattctaatgtttttg 37  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  39814599 ttaatttatgttttgttaaaaaattctaatttttttg 39814563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University