View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5916_low_60 (Length: 225)

Name: NF5916_low_60
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5916_low_60
NF5916_low_60
[»] chr8 (1 HSPs)
chr8 (11-207)||(3373410-3373606)
[»] chr6 (3 HSPs)
chr6 (11-207)||(18848192-18848388)
chr6 (11-207)||(16360070-16360261)
chr6 (150-200)||(12790462-12790512)
[»] scaffold0215 (1 HSPs)
scaffold0215 (11-207)||(26067-26263)
[»] chr3 (1 HSPs)
chr3 (14-207)||(29910405-29910594)
[»] chr1 (3 HSPs)
chr1 (14-207)||(14709677-14709866)
chr1 (156-200)||(18476061-18476105)
chr1 (156-200)||(22011519-22011563)
[»] chr2 (2 HSPs)
chr2 (11-200)||(21183087-21183270)
chr2 (12-45)||(21184393-21184426)
[»] scaffold0047 (1 HSPs)
scaffold0047 (156-200)||(58290-58334)
[»] chr7 (1 HSPs)
chr7 (156-200)||(4429829-4429873)
[»] chr5 (1 HSPs)
chr5 (156-200)||(19314016-19314060)
[»] chr4 (1 HSPs)
chr4 (156-200)||(17732328-17732372)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 3373606 - 3373410
Alignment:
Q  11 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3373606 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 3373507  T
Q  111 acaatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3373506 acaatccaaataacgtacacttgaacataaacatctgtcttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 3373410  T

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Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 18848192 - 18848388
Alignment:
Q  11 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18848192 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 18848291  T
Q  111 acaatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18848292 acaatccaaataacgtacacttgaacataaacatctgtcttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 18848388  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 16360261 - 16360070
Alignment:
Q  11 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  16360261 aatatatcattcatatatgcatcaaaataacattgatcacaataaagtattcgaatatttaat-gggtcctgttaactcaaaatgtcaattatcattttc 16360163  T
Q  111 acaatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||||| |||||||    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16360162 acaatcaaaataac----acttgaacataaacatctgtcttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattaaccattc 16360070  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 12790512 - 12790462
Alignment:
Q  150 ttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    ||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  12790512 ttcatctcttgtatttccaaatcttgaaattcttcatccatatcatcatta 12790462  T

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Target: scaffold0215 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 26263 - 26067
Alignment:
Q  11 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26263 aatatatcattcatatatgtatcaaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttc 26164  T
Q  111 acaatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26163 acaatccaaataacgtacacttgaacataaacatctgtcttcatctcttgtacttctaaatctttaaattcttcatcgatatcatcattagccattc 26067  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 29910594 - 29910405
Alignment:
Q  14 atatcattcatatatgtatc-aaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttcac 112  Q
    |||||||||||||| ||||| |||||||||||  |||| |||||||| || |||||||||| |  || | |||  |||||||||||||||||||||||||    
T  29910594 atatcattcatataggtatccaaaataacattcttcacgataaagtactcaaatatttaat-gtatacttttacgtcaaaatgtcaattatcattttcac 29910496  T
Q  113 aatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||| ||| |||    |||| ||||| ||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  29910495 aatctaaacaac----acttaaacatcaacatatgtcttcatctcttgtacttcaaaatctcgaaattcttcatcgatatcatcattaaccattc 29910405  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 14709677 - 14709866
Alignment:
Q  14 atatcattcatatatgtatc-aaaataacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcattttcac 112  Q
    |||||||||||||| ||||| |||||||||||  |||| |||||||| || |||||||||| |  || | |||  |||||||||||||||||||||||||    
T  14709677 atatcattcatataggtatccaaaataacattcttcacgataaagtactcaaatatttaat-gtatacttttacgtcaaaatgtcaattatcattttcac 14709775  T
Q  113 aatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcattagccattc 207  Q
    |||| ||| |||    |||| ||||| ||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  14709776 aatctaaacaac----acttaaacatcaacatatgtcttcatctcttgtacttcaaaatctcgaaattcttcatcgatatcatcattaaccattc 14709866  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 18476061 - 18476105
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||    
T  18476061 tcttgtactttcaaatcttgaaattcttcgtccatatcatcatta 18476105  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 22011563 - 22011519
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||    
T  22011563 tcttgtgcttccaaatcttcaaattcttcattgatatcatcatta 22011519  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 21183087 - 21183270
Alignment:
Q  11 aatatatcattcatatatgtatcaaaa-taacattgatcacaataaagtattcgaatatttaattgggtattgttaactcaaaatgtcaattatcatttt 109  Q
    ||||||||||||||||| ||||||||| |||||||  |||| |||||||| ||||||||||||| |  || | | || ||||||||||||||||||||||    
T  21183087 aatatatcattcatataggtatcaaaaataacattcttcacgataaagtactcgaatatttaat-gtatactctcaagtcaaaatgtcaattatcatttt 21183185  T
Q  110 cacaatccaaataacgtacacttgaacataaacatctgtgttcatctcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    |||  |  ||| |||    |||| ||||| ||||| ||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  21183186 caccct--aaacaac----acttaaacatcaacatatgtcttcatctcttgtacttcaaaatattgaaattcttcattgatatcatcatta 21183270  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 21184393 - 21184426
Alignment:
Q  12 atatatcattcatatatgtatcaaaataacattg 45  Q
    ||||||||||||||||| ||||||||||||||||    
T  21184393 atatatcattcatatatctatcaaaataacattg 21184426  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 58290 - 58334
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    |||||| |||| ||||||||||||| |||||||||||||| ||||    
T  58290 tcttgtgcttccaaatcttgaaattattcatcgatatcattatta 58334  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 4429829 - 4429873
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||    
T  4429829 tcttgtgcttccaaatcttcaaattcttcattgatatcatcatta 4429873  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 19314060 - 19314016
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    |||||| |||| ||||||| ||||||||||| |||||||||||||    
T  19314060 tcttgtgcttccaaatcttcaaattcttcattgatatcatcatta 19314016  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 17732328 - 17732372
Alignment:
Q  156 tcttgtacttctaaatcttgaaattcttcatcgatatcatcatta 200  Q
    ||||||||||  ||||||||||||||||| || ||||||||||||    
T  17732328 tcttgtactttcaaatcttgaaattcttcgtccatatcatcatta 17732372  T

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