View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_low_61 (Length: 224)
Name: NF5916_low_61
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_61 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 8713706 - 8713899
Alignment:
| Q |
17 |
aatattcagaaaactatacatagtgcttataacttggaatctacatggaccacaacaaatatatgaacattcacttaaaacagattacgcagcaactaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8713706 |
aatattcagaaaactatacatagtgcttataacttggaatctacatggaccacaacaaatatatgaacattcacttaaaacagattaagcagcaactaaa |
8713805 |
T |
|
| Q |
117 |
attgtcttctatgatgtttggttcttcttggcacaaaaatataataaatcaaaaataatatagatactaccctcaggcctcagcatgtacttta |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8713806 |
attgttttctatgatgtttggttcttcttggcacaaaaatataataaatcaaaaataatatagatactaccctcgggcctcagcatgtacttta |
8713899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 8732079 - 8732248
Alignment:
| Q |
21 |
ttcagaaaactatacatagtgcttataacttggaatctacatggaccacaacaaatatatgaacattcacttaaaacagattacg-cagcaactaaaatt |
119 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||| ||||||| |
|
|
| T |
8732079 |
ttcagaaaactatacagagtgcatataatttggaatctacatggaccaacacaaatatatgaacactcacttaaaacagattaagacagcaa-taaaatt |
8732177 |
T |
|
| Q |
120 |
gtcttctatgatgtttggttcttcttggcacaaaaatataataaatcaaaaataatatagatactaccctca |
191 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
8732178 |
gttttctatgatgtttggttcttcttggcacaaagatataataaatcaaaaaaaata-atatactaccctca |
8732248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 8726926 - 8726989
Alignment:
| Q |
17 |
aatattcagaaaactatacatagtgcttataacttggaatctacatggaccacaacaaatatat |
80 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
8726926 |
aatatttagaaaactatacagagtgcttataatttggaatctacatggaccaacacaaatatat |
8726989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 53948712 - 53948558
Alignment:
| Q |
17 |
aatattcagaaaactatacatagtgcttataacttggaatctacatggaccacaacaaatatatgaac-attcacttaaaacagattacg-cagcaacta |
114 |
Q |
| |
|
||||||||||||| |||| | |||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||| | |
|
|
| T |
53948712 |
aatattcagaaaattataga--gtgcctataacttggaatctacatggaccgcaacaaatatatgaacaattcacttaaaacagattaagacagcaacca |
53948615 |
T |
|
| Q |
115 |
aaattgtcttctatgatgtttggttcttcttggcacaaaaatataataaatcaaaaa |
171 |
Q |
| |
|
||||||| ||||| ||||||||| ||||| ||||| ||||| |||||||| ||||| |
|
|
| T |
53948614 |
aaattgttttctacgatgtttggctcttcatggcataaaaaattaataaattaaaaa |
53948558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University