View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5916_low_63 (Length: 219)
Name: NF5916_low_63
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_63 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31753836 - 31754054
Alignment:
| Q |
1 |
cttttatattgtgataaagcgcggtcaaaattatagttgcaacatattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatct |
100 |
Q |
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| T |
31753836 |
cttttatattgtgataaagtgcggtcaaaattatagttgcaacatattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatct |
31753935 |
T |
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| Q |
101 |
gcacatgatatgatcggacgtttacaagctttgtcaacagctgctttaatttgatcaacaacttcaaaacctctaagtgaattgatatttgggattgcag |
200 |
Q |
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| T |
31753936 |
gcacatgatatgatcggacgtttacaagctttgtcaactgcggctttaatttgatcaacaacctcaaaacctctaagtgaattgatatttggaattgcag |
31754035 |
T |
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| Q |
201 |
tcttctcaccaatgaaggt |
219 |
Q |
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| T |
31754036 |
tcttctcaccaatgaaggt |
31754054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 31768185 - 31768366
Alignment:
| Q |
38 |
tgcaacatattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatctgcacatgatatgatcggacgtttacaagctttgtcaa |
137 |
Q |
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| T |
31768185 |
tgcaaaatattggaaagacttacaatggcaacagagtctcgagctgctatagctaaaatatcggcacatgatacgacatcgcgtttgcaagctttggtaa |
31768284 |
T |
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| Q |
138 |
cagctgctttaatttgatcaacaacttcaaaacctctaagtgaattgatatttgggattgcagtcttctcaccaatgaaggt |
219 |
Q |
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| T |
31768285 |
ctgcagctttgatttgatcaacaacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggt |
31768366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 31761355 - 31761530
Alignment:
| Q |
44 |
atattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatctgcacatgatatgatcggacgtttacaagctttgtcaacagctg |
143 |
Q |
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||||| |||| |||||| ||||||||||| |||||||| ||||||||||| ||||| || ||||||| || ||||| ||||||||| ||| ||| |
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| T |
31761355 |
atatttgaaagacttacaatggcaacagagtctcgagcagctatagctaaaatatcggcgcatgatacgacatcgcgtttgcaagctttggtaactgctt |
31761454 |
T |
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| Q |
144 |
ctttaatttgatcaacaacttcaaaacctctaagtgaattgatatttgggattgcagtcttctcaccaatgaaggt |
219 |
Q |
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| T |
31761455 |
ctttaatttgatcaacaacctcaaaacctctaattgaattgatatttggaaatgcagtcttctcaccaatgaaggt |
31761530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 31749339 - 31749185
Alignment:
| Q |
38 |
tgcaacatattggaaatacttactatggcaacagaatctcgagctgctatagctaagatatctgcacatgatatgatcggacgtttacaagctttgtcaa |
137 |
Q |
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||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||||| || |
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| T |
31749339 |
tgcaaaatattggaaagacttactatggcaacggaatctcgagctgctatagctaaaatatctgcacatgatactacatcacgtttgcaagctttggtaa |
31749240 |
T |
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| Q |
138 |
cagctgctttaatttgatcaacaacttcaaaacctctaagtgaattgatatttgg |
192 |
Q |
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| T |
31749239 |
ctgcagctttgatttgatcaacgacctcaaaacttctaattgaattgatatttgg |
31749185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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