View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5916_low_7 (Length: 579)
Name: NF5916_low_7
Description: NF5916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5916_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 163; Significance: 9e-87; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 391 - 561
Target Start/End: Original strand, 6278929 - 6279099
Alignment:
| Q |
391 |
ggctcagtaaataggtgacctaatgtaaaagatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatggaag |
490 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6278929 |
ggctcagtaaatagatgacctaatgtaaaagatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatgtaag |
6279028 |
T |
|
| Q |
491 |
gatatttggagattatcatattcaaattttggccaaaaccaccacccacatcaaccaacaatgatatgtct |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6279029 |
gatatttggagattatcatattcaaattttggccaaaaccaccacccacatcaaccaacaatgatatgtct |
6279099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 153 - 316
Target Start/End: Original strand, 6278691 - 6278854
Alignment:
| Q |
153 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaaattactcatactatgggcatgttcaaaggtagtctttcat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6278691 |
aattattaatagtttccctaactttattgtactgaatttgttaggagataaacaaataaagttactcatactctgggcatgttcaaaggtagtctttcat |
6278790 |
T |
|
| Q |
253 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctattaaaaatcatctat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6278791 |
atatgttttgttttgttaatattatattatgttagtaattgaatttctgttaaaaatcatctat |
6278854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 6278604 - 6278693
Alignment:
| Q |
12 |
atcaattaatt-caaagtcttacgaagtgcatnnnnnnntgtttcttaaaaatataagttaaatacttttcaaaatcataattacataat |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6278604 |
atcaattaatttcaaagtcttacgaaatgcataaaaaaatgtttcttaaaaatataagttaaatacttttcaaaatcataattacataat |
6278693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 421 - 557
Target Start/End: Original strand, 6283025 - 6283161
Alignment:
| Q |
421 |
gatatacctggataatctggagcgttttctatcactggtggcagatcaaaattaataccctttatggaaggatatttggagattatcatattcaaatttt |
520 |
Q |
| |
|
||||||||||||||| |||||| | || ||| ||| | |||| |||||||||||| |||||||| |||||||| || |||||||||||||||||| ||| |
|
|
| T |
6283025 |
gatatacctggataaattggagcatgttgtataacttggggcaaatcaaaattaatgccctttatagaaggatacttagagattatcatattcaaacttt |
6283124 |
T |
|
| Q |
521 |
ggccaaaaccaccacccacatcaaccaacaatgatat |
557 |
Q |
| |
|
| |||| || || || ||||||||||| | |||||| |
|
|
| T |
6283125 |
gcccaattcctcctccaacatcaaccaatattgatat |
6283161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 32461952 - 32461908
Alignment:
| Q |
54 |
tcttaaaaatataagttaaatacttttcaaaatcataattacata |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||| |||||| |
|
|
| T |
32461952 |
tcttaaaaatataagttaaataattttcgaaataataaatacata |
32461908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University